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Add parameters for the white-list feature. Add a function to retrieve parameters as a Boolean. Fix a bug in the py cmd-line parser - it should key required args by the cmd-line string, not the dest string.

# This file contains JSOC_SDP-specific configuration information. It is used only if the '-sdp' flag is used 
# as an argument to the check-out script (checkoutDRMS.pl). To change the configuration at Stanford, edit
# this file directly, and commit those changes to the source-tree repository.

# The lines in the __PROJ_MK_RULES__ section define JSOC_SDP-specific make variables, targets, and rules. When 
# localize.py is run, it will process this section and create JSOC/localization/make_basic.mk. These are
# available to all JSOC_SDP projects.

# The lines in the __PROJ__ section define JSOC_SDP projects. When localize.py runs, file content will be 
# added to JSOC/localization/Rules.mk and JSOC/localization/target.mk.

# The lines in the __PROJCFG__ section define additional project-specific configuration. The code in this
# section must be in a shell-scripting language, and will be executed as is.

# The lines in the __MAKE__ section define global make variables to configure the make process. A subset of 
# these variables defines the locations of JSOC_SDP-specific third-party libraries. These values apply to all code 
# in both JSOC/base and JSOC/proj directories.

__DEFS__
q:SERVER                        hmidb
q:DRMSPGPORT                    5432
q:SUMS_DB_HOST                  hmidb3
q:SUMPGPORT                     5434
a:DRMS_LOCAL_SITE_CODE          0x0000
q:DBNAME                        jsoc
q:WEB_DBUSER                    apache
q:POSTGRES_ADMIN                postgres
q:SUMS_MANAGER                  production
# This seems like a bad idea to make the UID a parameter. Why not just convert the SUM_MANAGER value
# to a UID when needed? If the UID of the SUM_MANAGER changes, we have to change the UID here.
q:SUMS_MANAGER_UID              388
q:SUMS_GROUP                    SOI
q:SUMLOG_BASEDIR                /usr/local/logs/SUM
q:SUMBIN_BASEDIR                /usr/local/bin
q:SUMSERVER                     k1
# The number of SUMS process SETS to spawn. If this number is not 1, then the number of SUMS processes
# is SUM_NUMSUM * 5 + 2.
a:SUM_NUMSUM                    3
a:SUM_MAXNUMSUM                 8
p:SUMS_TAPE_AVAILABLE           1
p:SUMS_MULTIPLE_PARTNSETS       1
# No idea what this parameter means. It isn't used anywhere in our code, but for some reason
# it is part of the config.local set, so we have to include it here.
a:SUMS_DEBUG                    1
q:PRODUSER_DBHOST               hmidb:5432
q:PRODUSER_DBNAME               jsoc
q:PRODUSER_PRODTAB              su_production.produsers
q:PRODUSER_COLUSER              username
q:SUMRM_PART_PERCENT_FREE       3
q:SUMRM_SLEEP                   300
# This is a file in SUMLOG_BASEDIR.
q:SUMRM_LOG                     sum_rm.cfg
q:SUMRM_MAIL	      	        sys2@solar2
q:SUMRM_NOOP		            0
q:SUMRM_USER		            production
q:SUMRM_NORUN_START	            0
q:SUMRM_NORUN_STOP              0
# JMD
p:JMD_IS_INSTALLED              0
q:JMD_URL                       http://localhost:8080/JMD/JMD
# Remote SUMS
q:RS_SITE_TABLE                         drms.rs_sites
q:RS_REQUEST_TABLE                      drms.rs_requests
q:RS_SU_TABLE                           drms.rs_sus
q:RS_DBNAME                             jsoc
q:RS_DBHOST                             hmidb
a:RS_DBPORT                             5432
q:RS_DBUSER                             production
q:RS_LOCKFILE                           /home/jsoc/locks/remotesums.lck
q:RS_LOGDIR                             /home/jsoc/jsoclogs/rsums
a:RS_DLTIMEOUT                          30
a:RS_REQTIMEOUT                          5
a:RS_MAXTHREADS                         32
q:RS_BINPATH                            /home/jsoc/cvs/Development/JSOC/bin/linux_x86_64
# White-list (access to internal stuff)
a:WL_HASWL                              1
q:WL_FILE                               /web/jsoc/htdocs/whitelist.txt

__MAKE__
# JSOC_SDP third-party libraries used by base
# The parameters in this section are used to create make variables. For example, the line 
# 'POSTGRES_LIB = pq' will cause a make variable named POSTGRES_LIB to be created and to
# be assigned the value 'pq'.

# If the name in the left column contains a colon, then the name on the LHS is the parameter name. The RHS is
# a description of which platforms or specific machines the parameter applies to. For example, 
# the name POSTGRES_INCS:X86_64 implies that the value of the parameter named POSTGRES_INCS is /usr/include
# when make is run on a linux_x86_64 machine. The RHS string can contain either a platform identifier
# (X86_64, IA32, AVX, or IA64) or it can be a string that identifies a particular machine, like d02.
# If the string is not one of the defined platform identifiers, then it is considered a machine identifier.
# A machine identifier can specify more than one machine. The name POSTGRES_INCS:hmidb specifies
# all machines whose names contain the string 'hmidb'. So, for machines hmidb, hmidb2, and hmidb3, the
# value of the POSTGRES_INCS parameter is /usr/local/pgsql/include.
#
# If the RHS is a platform identifier, then make compares the value of $JSOC_MACHINE (which is in 
# reality a misnomer, since it truly specifies the name of the machine platform, not the name
# of the machine) to the platform name specified by the RHS string. For example, 
# if the RHS string is 'avx', then make compares $JSOC_MACHINE to
# 'linux_avx', and if there is a match, then the parameter's value specified in the second column is assigned
# to the make variable. If the RHS is a machine identifier, then make compares the value of $MACHTYPE
# (another misnormer, since it is the name of the machine, not the name of some type of machine ) to
# the machine names specified by the RHS. For example, if the RHS string is 'hmidb' then make 
# compares $MACHTYPE to 'hmidb', and if 'hmidb' is a substring of $MACHTYPE, then the parameter's 
# value specified in the second column is assigned to the make variable
# 
# Blocks defined by the _CUST_/_ENDCUST_ tags are copied ver batim into the output make file.

POSTGRES_LIB            pq
CFITSIO_LIB             cfitsio

POSTGRES_INCS:X86_64    /usr/include
POSTGRES_INCS:IA32      /usr/include
POSTGRES_INCS:AVX       /usr/include
POSTGRES_INCS:IA64      /usr/include/pgsql
POSTGRES_INCS:j1       /usr/include/pgsql
POSTGRES_INCS:d02      /usr/include/pgsql
POSTGRES_INCS:hmidb    /usr/local/pgsql/include
POSTGRES_INCS:cl1n0    __POSTGRES_DEVELOP_NOT_INSTALLED__
POSTGRES_INCS:dcs      /usr/include/pgsql

POSTGRES_LIBS:X86_64    /usr/lib64
POSTGRES_LIBS:IA32      /usr/lib
POSTGRES_LIBS:AVX       /usr/lib64
POSTGRES_LIBS:IA64      /usr/lib
POSTGRES_LIBS:j1       /usr/lib64
POSTGRES_LIBS:d02      /usr/lib
POSTGRES_LIBS:hmidb    /usr/lib64
POSTGRES_LIBS:cl1n0    /usr/lib64
POSTGRES_LIBS:dcs      /usr/lib64

CFITSIO_INCS:X86_64     /home/jsoc/include
CFITSIO_INCS:IA32       /home/jsoc/include
CFITSIO_INCS:AVX        /home/jsoc/avx/include
CFITSIO_INCS:IA64       /home/jsoc/include
CFITSIO_INCS:j1         /home/jsoc/include
CFITSIO_INCS:d02        __CFITSIO_NOT_INSTALLED__
CFITSIO_INCS:hmidb      /home/jsoc/include
CFITSIO_INCS:cl1n0      /home/jsoc/include
CFITSIO_INCS:dcs        /home/jsoc/include

CFITSIO_LIBS:X86_64     /home/jsoc/lib/linux-x86_64
CFITSIO_LIBS:IA32       /home/jsoc/lib/linux-ia32
CFITSIO_LIBS:AVX        /home/jsoc/avx/lib
CFITSIO_LIBS:IA64       /home/jsoc/lib/linux-ia64
CFITSIO_LIBS:j1         /home/jsoc/lib/linux-x86_64
CFITSIO_LIBS:d02        __CFITSIO_NOT_INSTALLED__
CFITSIO_LIBS:hmidb      /home/jsoc/lib/linux-x86_64
CFITSIO_LIBS:cl1n0      /home/jsoc/lib/linux-x86_64
CFITSIO_LIBS:dcs        /home/jsoc/lib/linux-x86_64

FFTW_INCS:X86_64        /home/jsoc/include
FFTW_INCS:IA32          /home/jsoc/include
FFTW_INCS:AVX           /home/jsoc/avx/include
FFTW_INCS:IA64          /home/jsoc/include

FFTW_LIBS:X86_64        /home/jsoc/lib/linux-x86_64
FFTW_LIBS:IA32          /home/jsoc/lib/linux-ia32
FFTW_LIBS:AVX           /home/jsoc/avx/lib
FFTW_LIBS:IA64          /home/jsoc/lib/linux-x86_64

GSL_INCS:X86_64         /home/jsoc/include
GSL_INCS:IA32           /home/jsoc/include
GSL_INCS:AVX            /home/jsoc/avx/include
GSL_INCS:IA64           /home/jsoc/include

GSL_LIBS:X86_64         /home/jsoc/lib/linux-x86_64
GSL_LIBS:IA32           /home/jsoc/lib/linux-ia32
GSL_LIBS:AVX            /home/jsoc/avx/lib
GSL_LIBS:IA64           /home/jsoc/lib/linux-x86_64

MPI_INCS:X86_64         /home/jsoc/mpich2/include
MPI_INCS:IA32           
MPI_INCS:AVX            /home/jsoc/avx/include
MPI_INCS:IA64           

MPI_LIBS:X86_64         /home/jsoc/mpich2/lib
MPI_LIBS:AVX            /home/jsoc/avx/lib

MPI_PATH:X86_64         /home/jsoc/mpich2/bin
MPI_PATH:AVX            /home/jsoc/avx/bin

TAR_INCS:X86_64         /home/jsoc/include
TAR_INCS:IA32           /home/jsoc/include
TAR_INCS:AVX            /home/jsoc/avx/include
TAR_INCS:IA64           /home/jsoc/include

TAR_LIBS:X86_64         /home/jsoc/lib/linux-x86_64
TAR_LIBS:IA32           /home/jsoc/lib/linux-ia32
TAR_LIBS:AVX            /home/jsoc/lib/linux_avx
TAR_LIBS:IA64           /home/jsoc/lib/linux-ia64

# Set custom make file to tell the make system that the gcc cfitsio library is called
# libcfitsio_gcc.a
_CUST_
ifeq ($(COMPILER), gcc)
    ifeq ($(JSOC_MACHINE), linux_x86_64)
    CFITSIO_LIB = cfitsio_gcc
    endif
endif
_ENDCUST_

__PROJ_MK_RULES__
$(CEXESUMS):                    $(LIBSUMSAPI) $(LIBSUM) $(LIBDSTRUCT)
$(MODEXESUMS):                  $(LIBSUMSAPI) $(LIBSUM)

$(MODEXEDROBJ):                 CF_TGT := $(CF_TGT) -I$(SRCDIR)/proj/libs/dr
$(MODEXEDR) $(MODEXEDR_SOCK):   $(LIBDR)
__PROJ__
<?xml version='1.0'?>
<projects>
   <proj>
        <name>libs</name>
        <subdirs>
             <subdir>astro</subdir>
             <subdir>dr</subdir>
             <subdir>dsputil</subdir>
             <subdir>gapfiller</subdir>
             <subdir>interpolate</subdir>
             <subdir>stats</subdir>
             <subdir>egsehmicomp</subdir>
             <subdir>imrotate</subdir>
       </subdirs>
   </proj>
   <proj>
        <name>datacapture</name>
        <subdirs>
             <subdir>apps</subdir>     
        </subdirs>
   </proj>
   <proj>
        <name>dsdsmigr</name>
        <subdirs>
             <subdir>libs</subdir>
             <subdir>apps</subdir>
        </subdirs>
   </proj>
   <proj>
        <name>maps_avgs</name>
        <subdirs>
             <subdir>apps</subdir>     
        </subdirs>
        <filters>
             <filter>
                  <name>COMPILER</name>
                  <value>icc</value>
             </filter>
        </filters>
   </proj>
   <proj>
        <name>mhd_32daily</name>
        <subdirs>
                <subdir>apps</subdir>
        </subdirs>
   </proj>
   <proj>
        <name>mhd_64cr</name>
        <subdirs>
                <subdir>apps</subdir>
        </subdirs>
   </proj>
   <proj>
        <name>util</name>
        <subdirs>
             <subdir>apps</subdir>     
        </subdirs>
   </proj>
   <proj>
        <name>lev0</name>
        <subdirs>
             <subdir>apps</subdir>     
        </subdirs>
   </proj>
   <proj>
        <name>lev1</name>
        <subdirs>
             <subdir>apps</subdir>     
        </subdirs>
   </proj>
   <proj>
        <name>jpe</name>
        <subdirs>
             <subdir>apps</subdir>     
        </subdirs>
   </proj>
   <proj>
        <name>lev1_aia</name>
        <subdirs>
             <subdir>apps</subdir>     
        </subdirs>
   </proj>
   <proj>
        <name>lev1_hmi</name>
        <subdirs>
             <subdir>apps</subdir>     
        </subdirs>
   </proj>
   <proj>
        <name>export</name>
        <subdirs>
             <subdir>libs/util</subdir>
             <subdir>apps</subdir>
        </subdirs>
   </proj>
   <proj>
        <name>globalhs</name>
        <subdirs>
            <subdir>apps</subdir>
            <subdir>libs/dtgf</subdir>
            <subdir>libs/inv2d</subdir>
            <subdir>libs/pkbgn</subdir>
            <subdir>libs/projection</subdir>
        </subdirs>
        <filters>
             <filter>
                  <name>COMPILER</name>
                  <value>icc</value>
             </filter>
       </filters>
   </proj>
   <proj>
        <name>lev1.5_hmi</name>
        <subdirs>
             <subdir>libs/lev15</subdir>
             <subdir>apps</subdir>
        </subdirs>
   </proj>
   <proj>
        <name>lev1.5_aia</name>
        <subdirs>
            <subdir>apps</subdir>
        </subdirs>
   </proj>
   <proj>
        <name>flatfield</name>
        <subdirs>
            <subdir>libs/flatfieldlib</subdir>
            <subdir>apps</subdir>
            <subdir>off_flat_IDL</subdir>
        </subdirs>
   </proj>
  <proj>
        <name>rings</name>
        <subdirs>
             <subdir>apps</subdir>
        </subdirs>
   </proj>
  <proj>
        <name>sharp</name>
        <subdirs>
             <subdir>apps</subdir>
        </subdirs>
        <filters>
             <filter>
                  <name>COMPILER</name>
                  <value>icc</value>
             </filter>
       </filters>
   </proj>
  <proj>
        <name>farside</name>
        <subdirs>
             <subdir>apps</subdir>
        </subdirs>
   </proj>
  <proj>
        <name>timed</name>
        <subdirs>
             <subdir>apps</subdir>
        </subdirs>
   </proj>
   <proj>
        <name>mag</name>
        <subdirs>
             <subdir>apps</subdir>
             <subdir>pfss/apps</subdir>
             <subdir>ambig/apps</subdir>
             <subdir>harp/apps</subdir>
             <subdir>harp/libs/matlab/mex/src/util</subdir>
             <subdir>harp/libs/matlab/mex/src/mex2c</subdir>
             <subdir>harp/libs/matlab/mfile-mex/standalone</subdir>
             <subdir>harp/libs/matlab/mfile-mex/assignment</subdir>
             <subdir>harp/libs/matlab/mfile-mex/fits</subdir>
             <subdir>harp/libs/matlab/mfile-mex/hmi-mask-patch</subdir>
             <subdir>ident/apps</subdir>
             <subdir>ident/libs/mex2c</subdir>
             <subdir>ident/libs/mexfunctions</subdir>
             <subdir>ident/libs/util</subdir>
             <subdir>patch/apps</subdir>
             <subdir>nlfff/apps</subdir>
             <subdir>d4vm/apps</subdir>
             <subdir>remapmags/apps</subdir>
             <subdir>synop/apps</subdir>
        </subdirs>
        <filters>
             <filter>
                  <name>COMPILER</name>
                  <value>icc</value>
             </filter>
       </filters>
   </proj>
   <proj>
        <name>limbfit</name>
        <subdirs>
            <subdir>apps</subdir>
        </subdirs>
        <filters>
             <filter>
                  <name>COMPILER</name>
                  <value>icc</value>
             </filter>
       </filters>
   </proj>
   <proj>
        <name>vfisv</name>
        <subdirs>
            <subdir>apps</subdir>
        </subdirs>
   </proj>
   <proj>
        <name>workflow</name>
        <subdirs>
            <subdir>apps</subdir>
        </subdirs>
   </proj>
   <proj>
        <name>cgem</name>
        <subdirs>
             <subdir>apps</subdir>
             <subdir>lorentz/apps</subdir>
        </subdirs>
        <filters>
             <filter>
                  <name>COMPILER</name>
                  <value>icc</value>
             </filter>
       </filters>
   </proj>
</projects>
__PROJCFG__
#! /bin/csh -f

# Project-specific configuration (like adding links to scripts to the $JSOCROOT/scripts
# directory).

find ../proj/lev0/scripts -mindepth 1 \( -path \*CVS -prune -o -exec ln -s {} . \; -a -exec echo "  " {} " OK" \; \) -o -exec echo "  " {} " ERROR - couldn't create link" \;