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Update the update script to download either the defined JSOC or DRMS module.  Also, create a synch script that does only the download of files - it doesn't actually build.  It also downloads either the JSOC or DRMS module.  This will assure the user they get only the files they need, and not more than that.  For example, base users won't get src/base/local/libs/dsds.

#! /bin/csh -f

set CLEAN = "no"
set CHKLIBS = "no"
set CCMD = "c"
set LCMD = "l"

foreach ARG ($argv)
    set FLAG = `echo $ARG | awk '{print substr($0, 2)}'`
    if ($FLAG == $CCMD) then
      set CLEAN = "yes"
    else if ($FLAG == $LCMD) then
      set CHKLIBS = "yes"
    endif
end

if ($CHKLIBS == "no") then
    echo -n "Remove links for local project configuration..."
    if (-d src/proj) then
	cd src/proj
	if (-e configure) then
	    rm configure
	endif
	if (-e make_basic.mk) then
	    rm make_basic.mk
	endif
	if (-e Rules.mk) then
	    rm Rules.mk
	endif
	if (-e target.mk) then
	    rm target.mk
	endif
	cd ../..
    endif
    echo "done"

    echo -n "Remove links to man pages..."
    if (-d man/man1) then
	cd man/man1
	find . -name "*.*" -exec rm {} \;
	cd ../..
    endif
    if (-d man/man3) then
	cd man/man3
	find . -name "*.*" -exec rm {} \;
	cd ../..
    endif
    echo "done"

    echo -n "Removing links to headers..."
    if (-d src/base/include) then
	cd src/base/include
	find . -name "*.h" -exec rm {} \;
	cd ../../..
    endif
    echo "done"

    echo -n "Removing links to scripts..."
    if (-d scripts) then
	cd scripts
	find . -name "*" -exec rm {} \;
	cd ..
    endif
    echo "done"

    echo -n "Removing links to jsds..."
    if (-d jsds) then
	cd jsds
	find . -name "*" -exec rm {} \;
	cd ..
    endif
    echo "done"

    echo

    if ($CLEAN == "yes") then

	if (-x src/base/local/libs/dsds/scripts/rmlinks.csh) then
	    src/base/local/libs/dsds/scripts/rmlinks.csh
	endif

	if (-x src/base/local/libs/soi/scripts/rmlinks.csh) then
	    src/base/local/libs/soi/scripts/rmlinks.csh
	endif
    else
	echo -n "Setting links for local project configuration..."
	if (-e suflag.txt) then
	    cd src/proj
	    ln -sf ../../projconf/su/configure configure
	    ln -sf ../../projconf/su/make_basic.mk make_basic.mk
	    ln -sf ../../projconf/su/Rules.mk Rules.mk
	    ln -sf ../../projconf/su/target.mk target.mk
	    cd ../..
	else
	    cd src/proj
	    ln -sf ../../projconf/ex/configure configure
	    ln -sf ../../projconf/ex/make_basic.mk make_basic.mk
	    ln -sf ../../projconf/ex/Rules.mk Rules.mk
	    ln -sf ../../projconf/ex/target.mk target.mk
	    cd ../..
	endif
	echo "done"

	echo -n "Setting links to man pages..."
	if (!(-d man/man1)) then
	    mkdir -p man/man1
	endif
	if (!(-d man/man3)) then
	    mkdir -p man/man3
	endif
	cd man/man1
	find ../.. -path '../../man/man1' -prune -o -path '*/man/man1/*.1' -exec ln -s {} . \;
	cd ../../man/man3
	find ../.. -path '../../man/man3' -prune -o -path '*/man/man3/*.3' -exec ln -s {} . \;
	cd ../..
	echo "done"

	echo "Setting links to headers..."
	if (!(-d src/base/include)) then
	    mkdir -p src/base/include
	endif
	cd src/base/include
	find .. -path '../include' -prune -o -name \*.h  \( \( -exec ln -s {} . \; -a -exec echo "  " {} " OK" \; \) -o -exec echo "  " {} " ERROR - couldn't create link" \; \)
	cd ../../..
	echo "done"
	echo
	
	echo "Setting links to scripts..."
        if (!(-d scripts)) then
	    mkdir scripts
	endif
	cd scripts

	# Sums scripts
	find ../src/base/sums/scripts -mindepth 1 \( -path \*CVS -prune -o -exec ln -s {} . \; -a -exec echo "  " {} " OK" \; \) -o -exec echo "  " {} " ERROR - couldn't create link" \;

	# Util scripts
	find ../src/base/util/scripts -mindepth 1 \( -path \*CVS -prune -o -exec ln -s {} . \; -a -exec echo "  " {} " OK" \; \) -o -exec echo "  " {} " ERROR - couldn't create link" \;

	# Project-specific scripts - these won't show up if you don't have the project source.
	if (-x ../src/proj/configure) then
	    ../src/proj/configure
	endif

	cd ..
	echo "done"
	echo

	echo "Setting links to jsds..."
	if (!(-d jsds)) then
	    mkdir jsds
	endif
	cd jsds
	find ../src/base \( -name \*.jsd -exec ln -s {} . \; -a -exec echo "  " {} " OK" \; \) -o \( -name \*.jsd -exec echo "  " {} " ERROR - couldn't create link" \; \)
	cd ..
	echo "done"
	echo

	# generate links for DSDS/SOI dynamic libraries - only do this if 
	# user's environment has access to /home/soi/CM
	if (-d /home/soi/CM/include && -d /home/soi/CM/src) then
	    if (-x src/base/local/libs/dsds/scripts/genlinks.csh) then
		src/base/local/libs/dsds/scripts/genlinks.csh
	    endif

	    if (-x src/base/local/libs/soi/scripts/genlinks.csh) then
		src/base/local/libs/soi/scripts/genlinks.csh
	    endif
	endif
    endif
endif

# Enter required library names and versions here.
if ($CHKLIBS == "yes") then

    echo
    echo "JSOC expects all third-party library header files to be located at $JSOCROOT/lib_third_party/include/ and all third-party libraries to be located at $JSOCROOT/lib_third_party/$JSOC_MACHINE/.  If you wish to build a target that uses one of the following third-paty libraries, please install the required library version and create a link from from $JSOCROOT/lib_third_party/include/ and $JSOCROOT/lib_third_party/$JSOC_MACHINE/ to the installed library headers and binary files, respectively."
    echo
    echo "Example:"
    echo "  cd $JSOCROOT/lib_third_party/"
    echo "  ln -s /usr/local/include include"
    echo "  cd $JSOCROOT/lib_third_party/$JSOC_MACHINE/"
    echo "  ln -s /usr/local/lib/libfftw3f.a libfftw3f.a "
    echo
    echo "Library libfftw3f.a (v. 3.1.2) required for targets: universe, examples, helloworld, xinterp, demo_td08062007"
    echo "Library libcfitsio.a (v. 3.03) required for targets: universe, examples, f_ingest_gong_mrv, f_dup_gong_mrv"

#    echo "Library libcfitsio.a (v. 3.03) required for targets: examples, helloworld"
#    echo "Library libmkl.so (v. 9.0) required for targets: examples, helloworld"
#    if ($JSOC_MACHINE == "linux_x86_64") then 
#	echo "Library libmkl_lapack64.so (v. 9.0) required for targets: examples, helloworld"
#    else echo "Library libmkl_lapack32.so (v. 9.0) required for targets: examples, helloworld"
#    endif


endif