1 mbobra 1.1 /*
2 * MODULE NAME: update_sharp_keys.c
3 *
4 * DESCRIPTION: This module recalculates SHARP keywords. This is accomplished by
5 * cloning a record, recalculating keywords of choice (i.e., user input),
6 * and pointing to the same segments as the old record. Associated error keys
7 * are computed by default.
8 *
9 * This module accounts for versioning by appending to the keyword CODEVER7 and HISTORY:
10 * CODEVER7 will contain multiple lines: the production build of sharp.c, the
11 * production build of include file sw_functions.c, and the production build
12 * of update_sharp_keys.c. HISTORY will include a human-readable sentence about which
13 * keywords were updated.
14 *
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15 mbobra 1.10 * N.B.: This module calculates the keyword specified in keylist and then does a
16 * drms_copykeys() to copy over all the remaining keywords. However, if [1] a keyword
17 * does not exist in the .jsd files of the input series, and [2] said keyword X is not
18 * specified in keylist, then [3] drms_copykeys() will copy DRMS_MISSING_VALUE into
19 * keyword X for all the output series.
20 *
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21 mbobra 1.1 * This module does not produce segments.
22 *
23 * INPUTS : -- DRMS SHARP series
24 * -- DRMS SHARP CEA series
25 * -- HARPNUM
26 * -- comma separated list of keywords to recalculate
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27 mbobra 1.9 * -- DEBUG flag (use like this debug=debug)
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28 mbobra 1.1 *
29 * AUTHOR : Monica Bobra
30 *
31 * Version : v0.0 Jun 14 2013
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32 mbobra 1.6 * v0.1 Feb 11 2014 Added different input and output series
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33 mbobra 1.1 *
34 * EXAMPLE :
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35 mbobra 1.6 * update_sharp_keys sharpseriesin=hmi.sharp_720s sharpceaseriesin=hmi.sharp_cea_720s //
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36 mbobra 1.9 * HARPNUM=1 sharpseriesout=hmi.sharp_720s sharpceaseriesout=hmi.sharp_cea_720s keylist=USFLUX,TOTPOT debug=debug
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37 mbobra 1.1 *
38 */
39
40 /* Include files */
41 #include <stdio.h>
42 #include <stdlib.h>
43 #include <time.h>
44 #include <sys/time.h>
45 #include <math.h>
46 #include <string.h>
47 #include "jsoc_main.h"
48 #include "astro.h"
49 #include "fstats.h"
50 #include "cartography.c"
51 #include "fresize.h"
52 #include "finterpolate.h"
53 #include "img2helioVector.c"
54 #include "copy_me_keys.c"
55 #include "errorprop.c"
56 #include "sw_functions.c"
57 #include <mkl_blas.h>
58 mbobra 1.1 #include <mkl_service.h>
59 #include <mkl_lapack.h>
60 #include <mkl_vml_functions.h>
61 #include <omp.h>
62
63 /* Define values */
64 #define PI (M_PI)
65 #define RADSINDEG (PI/180.)
66 #define ARRLENGTH(ARR) (sizeof(ARR) / sizeof(ARR[0]))
67 #define DIE(msg) {fflush(stdout); fprintf(stderr,"%s, status=%d\n", msg, status); return(status);}
68 #define SHOW(msg) {printf("%s", msg); fflush(stdout);}
69
70 char *module_name = "update_sharp_keys"; /* Module name */
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71 mbobra 1.6 char *version_id = "2014 Feb 12"; /* Version number */
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72 mbobra 1.1
73 ModuleArgs_t module_args[] =
74 {
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75 mbobra 1.9 {ARG_STRING, "sharpseriesin", NULL, "Input Sharp dataseries"},
76 {ARG_STRING, "sharpceaseriesin", NULL, "Input Sharp CEA dataseries"},
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77 mbobra 1.6 {ARG_STRING, "sharpseriesout", NULL, "Output Sharp dataseries"},
78 {ARG_STRING, "sharpceaseriesout", NULL, "Output Sharp CEA dataseries"},
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79 mbobra 1.9 {ARG_INT, "HARPNUM", NULL, "HARP number"},
80 {ARG_STRING, "keylist", NULL, "comma separated list of keywords to update"},
81 {ARG_STRING, "debug", NULL, "debug mode functionality. use like this: debug=debug"},
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82 mbobra 1.1 {ARG_END}
83 };
84
85
86 int DoIt(void)
87 {
88 int errbufstat=setvbuf(stderr, NULL, _IONBF, BUFSIZ);
89 int outbufstat=setvbuf(stdout, NULL, _IONBF, BUFSIZ);
90
91 int status = DRMS_SUCCESS;
92 int nrecs, irec;
93
94 /* Keywords */
95 float mean_vf;
96 float absFlux;
97 float count_mask;
98 float mean_hf;
99 float mean_gamma;
100 float mean_derivative_btotal;
101 float mean_derivative_bh;
102 float mean_derivative_bz;
103 mbobra 1.1 float mean_jz;
104 float us_i;
105 float mean_alpha;
106 float mean_ih;
107 float total_us_ih;
108 float total_abs_ih;
109 float totaljz;
110 float totpot;
111 float meanpot;
112 float area_w_shear_gt_45;
113 float meanshear_angle;
114 float area_w_shear_gt_45h;
115 float meanshear_angleh;
116 float mean_derivative_btotal_err;
117 float mean_vf_err;
118 float mean_gamma_err;
119 float mean_derivative_bh_err;
120 float mean_derivative_bz_err;
121 float mean_jz_err;
122 float us_i_err;
123 float mean_alpha_err;
124 mbobra 1.1 float mean_ih_err;
125 float total_us_ih_err;
126 float total_abs_ih_err;
127 float totaljz_err;
128 float meanpot_err;
129 float totpot_err;
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130 mbobra 1.6 float Rparam;
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131 mbobra 1.1 float meanshear_angle_err;
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132 mbobra 1.8 float totfx;
133 float totfy;
134 float totfz;
135 float totbsq;
136 float epsx;
137 float epsy;
138 float epsz;
139
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140 mbobra 1.6 char *sharpseriesin = (char *) params_get_str(&cmdparams, "sharpseriesin");
141 char *sharpceaseriesin = (char *) params_get_str(&cmdparams, "sharpceaseriesin");
142 char *sharpseriesout = (char *) params_get_str(&cmdparams, "sharpseriesout");
143 char *sharpceaseriesout = (char *) params_get_str(&cmdparams, "sharpceaseriesout");
144
145 int sameflag = strcmp(sharpseriesin, sharpseriesout) == 0;
146 int testflag = strcmp(sharpceaseriesin, sharpceaseriesout) == 0;
147 if (testflag != sameflag)
148 DIE("Either both outputs must be the same as their inputs, or both be different.");
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149 mbobra 1.1
150 int harpnum = params_get_int(&cmdparams, "HARPNUM");
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151 mbobra 1.6
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152 mbobra 1.1 char sharpquery[256];
153 char sharpceaquery[256];
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154 mbobra 1.6 sprintf(sharpceaquery, "%s[%d]\n", sharpceaseriesin,harpnum);
155 printf(sharpceaquery, "%s[%d]\n", sharpceaseriesin,harpnum);
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156 mbobra 1.1
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157 mbobra 1.6 sprintf(sharpquery, "%s[%d]\n", sharpseriesin,harpnum);
158 sprintf(sharpquery, "%s[%d]\n", sharpseriesin,harpnum);
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159 mbobra 1.1
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160 mbobra 1.6 DRMS_RecordSet_t *sharpinrecset= drms_open_records(drms_env, sharpquery, &status);
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161 mbobra 1.1 if (status != DRMS_SUCCESS)
162 DIE("Problem opening sharp recordset.");
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163 mbobra 1.6 nrecs=sharpinrecset->n;
164 if (nrecs == 0)
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165 mbobra 1.1 DIE("Sharp recordset contains no records.");
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166 mbobra 1.6 printf("nrecs=%d\n",nrecs);
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167 mbobra 1.1
168 DRMS_RecordSet_t *sharpceainrecset = drms_open_records(drms_env, sharpceaquery, &status);
169 if (status != DRMS_SUCCESS)
170 DIE("Problem opening sharp cea recordset.");
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171 mbobra 1.6 if (sharpceainrecset->n != nrecs)
172 DIE("Sharp cea recordset differs from sharp recordset.");
173
174 DRMS_RecordSet_t *sharpoutrecset, *sharpceaoutrecset;
175 if (sameflag)
176 {
177 sharpoutrecset = drms_clone_records(sharpinrecset, DRMS_PERMANENT, DRMS_SHARE_SEGMENTS, &status);
178 if (status != DRMS_SUCCESS)
179 DIE("Problem cloning sharp records.");
180 sharpceaoutrecset = drms_clone_records(sharpceainrecset, DRMS_PERMANENT, DRMS_SHARE_SEGMENTS, &status);
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181 mbobra 1.1 if (status != DRMS_SUCCESS)
182 DIE("Problem cloning sharp cea records.");
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183 mbobra 1.6 }
184 else
185 {
186 sharpoutrecset = drms_create_records(drms_env, nrecs, sharpseriesout, DRMS_PERMANENT, &status);
187 if (status != DRMS_SUCCESS)
188 DIE("Problem creating sharp records.");
189 sharpceaoutrecset = drms_create_records(drms_env, nrecs, sharpceaseriesout, DRMS_PERMANENT, &status);
190 if (status != DRMS_SUCCESS)
191 DIE("Problem creating sharp cea records.");
192 }
193
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194 mbobra 1.1
195 char *keylist = (char *) params_get_str(&cmdparams, "keylist");
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196 mbobra 1.9 char *debug = (char *) params_get_str(&cmdparams, "debug");
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197 mbobra 1.1
198 // Flags to indicate which keyword will be recalculated
199 int meanvfflag = (strstr(keylist,"USFLUX") != NULL); // generalize so that lowercase is acceptable
200 int totpotflag = (strstr(keylist,"TOTPOT") != NULL);
201 int meangamflag = (strstr(keylist,"MEANGAM") != NULL);
202 int meangbtflag = (strstr(keylist,"MEANGBT") != NULL);
203 int meangbzflag = (strstr(keylist,"MEANGBZ") != NULL);
204 int meangbhflag = (strstr(keylist,"MEANGBH") != NULL);
205 int meanjzdflag = (strstr(keylist,"MEANJZD") != NULL);
206 int totusjzflag = (strstr(keylist,"TOTUSJZ") != NULL);
207 int meanalpflag = (strstr(keylist,"MEANALP") != NULL);
208 int meanjzhflag = (strstr(keylist,"MEANJZH") != NULL);
209 int totusjhflag = (strstr(keylist,"TOTUSJH") != NULL);
210 int absnjzhflag = (strstr(keylist,"ABSNJZH") != NULL);
211 int savncppflag = (strstr(keylist,"SAVNCPP") != NULL);
212 int meanpotflag = (strstr(keylist,"MEANPOT") != NULL);
213 int meanshrflag = (strstr(keylist,"MEANSHR") != NULL);
214 int shrgt45flag = (strstr(keylist,"SHRGT45") != NULL);
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215 mbobra 1.6 int r_valueflag = (strstr(keylist,"R_VALUE") != NULL);
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216 mbobra 1.8 int totbsqflag = (strstr(keylist,"TOTBSQ") != NULL);
217 int totfxflag = (strstr(keylist,"TOTFX") != NULL);
218 int totfyflag = (strstr(keylist,"TOTFY") != NULL);
219 int totfzflag = (strstr(keylist,"TOTFZ") != NULL);
220 int epsxflag = (strstr(keylist,"EPSX") != NULL);
221 int epsyflag = (strstr(keylist,"EPSY") != NULL);
222 int epszflag = (strstr(keylist,"EPSZ") != NULL);
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223 mbobra 1.9 int debugflag = (strstr(debug,"debug") != NULL);
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224 mbobra 1.8
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225 mbobra 1.11
226 for (irec=0;irec<nrecs;irec++)
227 {
228
229
230 DRMS_Record_t *sharpinrec = sharpinrecset->records[irec];
231 DRMS_Record_t *sharpceainrec = sharpceainrecset->records[irec];
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232 mbobra 1.1 DRMS_Segment_t *inseg = drms_segment_lookup(sharpceainrec, "Br");
233 int nx = inseg->axis[0];
234 int ny = inseg->axis[1];
235 int nxny = nx * ny;
236 int dims[2] = {nx, ny};
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237 mbobra 1.6
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238 mbobra 1.1 // Temp arrays
239 float *bh = (float *) (malloc(nxny * sizeof(float)));
240 float *bt = (float *) (malloc(nxny * sizeof(float)));
241 float *jz = (float *) (malloc(nxny * sizeof(float)));
242 float *bpx = (float *) (malloc(nxny * sizeof(float)));
243 float *bpy = (float *) (malloc(nxny * sizeof(float)));
244 float *bpz = (float *) (malloc(nxny * sizeof(float)));
245 float *derx = (float *) (malloc(nxny * sizeof(float)));
246 float *dery = (float *) (malloc(nxny * sizeof(float)));
247 float *derx_bt = (float *) (malloc(nxny * sizeof(float)));
248 float *dery_bt = (float *) (malloc(nxny * sizeof(float)));
249 float *derx_bh = (float *) (malloc(nxny * sizeof(float)));
250 float *dery_bh = (float *) (malloc(nxny * sizeof(float)));
251 float *derx_bz = (float *) (malloc(nxny * sizeof(float)));
252 float *dery_bz = (float *) (malloc(nxny * sizeof(float)));
253 float *bt_err = (float *) (malloc(nxny * sizeof(float)));
254 float *bh_err = (float *) (malloc(nxny * sizeof(float)));
255 float *jz_err = (float *) (malloc(nxny * sizeof(float)));
256 float *jz_err_squared = (float *) (malloc(nxny * sizeof(float)));
257 float *jz_rms_err = (float *) (malloc(nxny * sizeof(float)));
258 float *jz_err_squared_smooth = (float *) (malloc(nxny * sizeof(float)));
259 mbobra 1.1 float *jz_smooth = (float *) (malloc(nxny * sizeof(float)));
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260 mbobra 1.11 float *err_term1 = (float *) (malloc(nxny * sizeof(float)));
261 float *err_term2 = (float *) (malloc(nxny * sizeof(float)));
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262 mbobra 1.12 float *err_termA = (float *) (calloc(nxny, sizeof(float)));
263 float *err_termB = (float *) (calloc(nxny, sizeof(float)));
264 float *err_termAt = (float *) (calloc(nxny, sizeof(float)));
265 float *err_termBt = (float *) (calloc(nxny, sizeof(float)));
266 float *err_termAh = (float *) (calloc(nxny, sizeof(float)));
267 float *err_termBh = (float *) (calloc(nxny, sizeof(float)));
268
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269 mbobra 1.1 // ephemeris variables
270 float cdelt1_orig, cdelt1, dsun_obs, imcrpix1, imcrpix2, crpix1, crpix2;
271 double rsun_ref, rsun_obs;
272
273 // outrecords
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274 mbobra 1.6 DRMS_Record_t *sharpoutrec, *sharpceaoutrec, *testrec;
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275 mbobra 1.1
276 // prepare to set CODEVER7 (CVS Version of the SHARP module)
277 char *cvsinfo0;
278 char *history0;
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279 mbobra 1.12 char *cvsinfo1 = strdup("$Id: update_sharp_keys.c,v 1.11 2015/01/25 18:30:34 mbobra Exp $");
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280 mbobra 1.1 char *cvsinfo2 = sw_functions_version();
281 char *cvsinfoall = (char *)malloc(2048);
282 char historyofthemodule[2048];
283 cvsinfo0 = drms_getkey_string(sharpinrec, "CODEVER7", &status);
284 strcpy(cvsinfoall,cvsinfo0);
285 strcat(cvsinfoall,"\n");
286 strcat(cvsinfoall,cvsinfo2);
287
288 // prepare to set HISTORY (History of the data)
289 char timebuf[1024];
290 float UNIX_epoch = -220924792.000;
291 sprint_time(timebuf, (double)time(NULL) + UNIX_epoch, "ISO", 0);
292 sprintf(historyofthemodule,"The following keywords were re-computed on %s: %s.",timebuf,keylist);
293 printf("historyofthemodule=%s\n",historyofthemodule);
294 history0 = drms_getkey_string(sharpinrec, "HISTORY", &status);
295 strcat(historyofthemodule,"\n");
296 strcat(historyofthemodule,history0);
297
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298 mbobra 1.6 // grab one record such that we can malloc the R-parameter calculation arrays outside of the loop
299 // assume scale = round(2./cdelt1) does not change for any given HARP
300 testrec = sharpceainrecset->records[nrecs/2];
301 dsun_obs = drms_getkey_float(testrec, "DSUN_OBS", &status);
302 rsun_ref = drms_getkey_double(testrec, "RSUN_REF", &status);
303 cdelt1_orig = drms_getkey_float(testrec, "CDELT1", &status);
304 cdelt1 = (atan((rsun_ref*cdelt1_orig*RADSINDEG)/(dsun_obs)))*(1/RADSINDEG)*(3600.);
305 int scale = round(2.0/cdelt1);
306 int nx1 = nx/scale;
307 int ny1 = ny/scale;
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308 mbobra 1.7 int nxp = nx1+40;
309 int nyp = ny1+40;
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310 mbobra 1.6
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311 mbobra 1.10 // check to make sure that the dimensions passed into fsample() are adequate
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312 mbobra 1.6 if (nx1 > floor((nx-1)/scale + 1) )
313 DIE("X-dimension of output array in fsample() is too large.");
314 if (ny1 > floor((ny-1)/scale + 1) )
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315 mbobra 1.10 DIE("Y-dimension of output array in fsample() is too large.");
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316 mbobra 1.6
317 // malloc some arrays for the R parameter calculation
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318 mbobra 1.7 float *rim = (float *)malloc(nx1*ny1*sizeof(float));
319 float *p1p0 = (float *)malloc(nx1*ny1*sizeof(float));
320 float *p1n0 = (float *)malloc(nx1*ny1*sizeof(float));
321 float *p1p = (float *)malloc(nx1*ny1*sizeof(float));
322 float *p1n = (float *)malloc(nx1*ny1*sizeof(float));
323 float *p1 = (float *)malloc(nx1*ny1*sizeof(float));
324 float *pmap = (float *)malloc(nxp*nyp*sizeof(float));
325 float *p1pad = (float *)malloc(nxp*nyp*sizeof(float));
326 float *pmapn = (float *)malloc(nx1*ny1*sizeof(float));
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327 mbobra 1.8
328 // define some arrays for the lorentz force calculation
329 float *fx = (float *) (malloc(nxny * sizeof(float)));
330 float *fy = (float *) (malloc(nxny * sizeof(float)));
331 float *fz = (float *) (malloc(nxny * sizeof(float)));
332
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333 mbobra 1.1 // Get emphemeris
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334 mbobra 1.7 sharpinrec = sharpinrecset->records[irec];
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335 mbobra 1.6 sharpceainrec = sharpceainrecset->records[irec];
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336 mbobra 1.7 cdelt1_orig = drms_getkey_float(sharpceainrec, "CDELT1", &status);
337 dsun_obs = drms_getkey_float(sharpinrec, "DSUN_OBS", &status);
338 rsun_ref = drms_getkey_double(sharpinrec, "RSUN_REF", &status);
339 rsun_obs = drms_getkey_double(sharpinrec, "RSUN_OBS", &status);
340 imcrpix1 = drms_getkey_float(sharpinrec, "IMCRPIX1", &status);
341 imcrpix2 = drms_getkey_float(sharpinrec, "IMCRPIX2", &status);
342 crpix1 = drms_getkey_float(sharpinrec, "CRPIX1", &status);
343 crpix2 = drms_getkey_float(sharpinrec, "CRPIX2", &status);
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344 mbobra 1.6
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345 mbobra 1.1 sharpoutrec = sharpoutrecset->records[irec];
346 sharpceaoutrec = sharpceaoutrecset->records[irec];
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347 mbobra 1.6 if (!sameflag)
348 {
349 drms_copykeys(sharpoutrec, sharpinrec, 0, kDRMS_KeyClass_Explicit);
350 drms_copykeys(sharpceaoutrec, sharpceainrec, 0, kDRMS_KeyClass_Explicit);
351 }
352
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353 mbobra 1.11 TIME trec, tnow; /* 1970.01.01_00:00:00_UTC */
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354 mbobra 1.6 tnow = (double)time(NULL);
355 tnow += UNIX_epoch;
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356 mbobra 1.1
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357 mbobra 1.9 if (debugflag)
358 {
359 printf("i=%d\n",irec);
360 }
361
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362 mbobra 1.6 // set CODEVER7 and HISTORY and DATE
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363 mbobra 1.1 drms_setkey_string(sharpoutrec, "CODEVER7", cvsinfoall);
364 drms_setkey_string(sharpoutrec,"HISTORY",historyofthemodule);
365 drms_setkey_string(sharpceaoutrec, "CODEVER7", cvsinfoall);
366 drms_setkey_string(sharpceaoutrec,"HISTORY",historyofthemodule);
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367 mbobra 1.6 drms_setkey_time(sharpoutrec,"DATE",tnow);
368 drms_setkey_time(sharpceaoutrec,"DATE",tnow);
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369 mbobra 1.1
370 // Get bx, by, bz, mask
371 // Use HARP (Turmon) bitmap as a threshold on spaceweather quantities
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372 mbobra 1.6 DRMS_Segment_t *bitmaskSeg = drms_segment_lookup(sharpceainrec, "bitmap");
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373 mbobra 1.1 DRMS_Array_t *bitmaskArray = drms_segment_read(bitmaskSeg, DRMS_TYPE_INT, &status);
374 int *bitmask = (int *) bitmaskArray->data; // get the previously made mask array
375
376 //Use conf_disambig map as a threshold on spaceweather quantities
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377 mbobra 1.6 DRMS_Segment_t *maskSeg = drms_segment_lookup(sharpceainrec, "conf_disambig");
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378 mbobra 1.1 DRMS_Array_t *maskArray = drms_segment_read(maskSeg, DRMS_TYPE_INT, &status);
379 if (status != DRMS_SUCCESS)
380 DIE("No CONF_DISAMBIG segment.");
381 int *mask = (int *) maskArray->data; // get the previously made mask array
382
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383 mbobra 1.6 //Use magnetogram map to compute R
384 DRMS_Segment_t *losSeg = drms_segment_lookup(sharpceainrec, "magnetogram");
385 DRMS_Array_t *losArray = drms_segment_read(losSeg, DRMS_TYPE_FLOAT, &status);
386 float *los = (float *) losArray->data; // los
387
388 DRMS_Segment_t *bxSeg = drms_segment_lookup(sharpceainrec, "Bp");
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389 mbobra 1.1 DRMS_Array_t *bxArray = drms_segment_read(bxSeg, DRMS_TYPE_FLOAT, &status);
390 float *bx = (float *) bxArray->data; // bx
391
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392 mbobra 1.6 DRMS_Segment_t *bySeg = drms_segment_lookup(sharpceainrec, "Bt");
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393 mbobra 1.1 DRMS_Array_t *byArray = drms_segment_read(bySeg, DRMS_TYPE_FLOAT, &status);
394 float *by = (float *) byArray->data; // by
395 for (int i = 0; i < nxny; i++) by[i] *= -1;
396
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397 mbobra 1.6 DRMS_Segment_t *bzSeg = drms_segment_lookup(sharpceainrec, "Br");
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398 mbobra 1.1 DRMS_Array_t *bzArray = drms_segment_read(bzSeg, DRMS_TYPE_FLOAT, &status);
399 float *bz = (float *) bzArray->data; // bz
400
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401 mbobra 1.6 DRMS_Segment_t *bz_errSeg = drms_segment_lookup(sharpceainrec, "Br_err");
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402 mbobra 1.1 DRMS_Array_t *bz_errArray = drms_segment_read(bz_errSeg, DRMS_TYPE_FLOAT, &status);
403 float *bz_err = (float *) bz_errArray->data; // bz_err
404
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405 mbobra 1.6 DRMS_Segment_t *by_errSeg = drms_segment_lookup(sharpceainrec, "Bt_err");
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406 mbobra 1.1 DRMS_Array_t *by_errArray = drms_segment_read(by_errSeg, DRMS_TYPE_FLOAT, &status);
407 float *by_err = (float *) by_errArray->data; // by_err
408
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409 mbobra 1.6 DRMS_Segment_t *bx_errSeg = drms_segment_lookup(sharpceainrec, "Bp_err");
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410 mbobra 1.1 DRMS_Array_t *bx_errArray = drms_segment_read(bx_errSeg, DRMS_TYPE_FLOAT, &status);
411 float *bx_err = (float *) bx_errArray->data; // bx_err
412
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413 mbobra 1.6 /***** USFLUX, Example Function 1 *************************************/
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414 mbobra 1.1 if (meanvfflag)
415 {
416 // Compute unsigned flux
417 if (computeAbsFlux(bz_err, bz , dims, &absFlux, &mean_vf, &mean_vf_err,
418 &count_mask, mask, bitmask, cdelt1, rsun_ref, rsun_obs))
419 {
420 mean_vf = DRMS_MISSING_FLOAT;
421 mean_vf_err = DRMS_MISSING_FLOAT;
422 count_mask = DRMS_MISSING_INT;
423 }
424
425 drms_setkey_float(sharpoutrec, "USFLUX", mean_vf);
426 drms_setkey_float(sharpoutrec, "CMASK", count_mask);
427 drms_setkey_float(sharpoutrec, "ERRVF", mean_vf_err);
428
429 drms_setkey_float(sharpceaoutrec, "USFLUX", mean_vf);
430 drms_setkey_float(sharpceaoutrec, "CMASK", count_mask);
431 drms_setkey_float(sharpceaoutrec, "ERRVF", mean_vf_err);
432 }
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433 mbobra 1.6
434 /***** RPARAM, Example Function 14 *************************************/
435 if (r_valueflag)
436 {
437 if (computeR(bz_err, los , dims, &Rparam, cdelt1, rim, p1p0, p1n0,
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438 mbobra 1.7 p1p, p1n, p1, pmap, nx1, ny1, scale, p1pad, nxp, nyp, pmapn))
439
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440 mbobra 1.6 {
441 Rparam = DRMS_MISSING_FLOAT;
442 }
443
444 drms_setkey_float(sharpoutrec, "R_VALUE", Rparam);
445 drms_setkey_float(sharpceaoutrec, "R_VALUE", Rparam);
446
447 }
448
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449 mbobra 1.1 /***** MEANPOT and TOTPOT, Example Function 13 (Requires Keiji's code) **/
450
451 if (totpotflag || meanpotflag)
452 {
453 // First compute potential field
454 for (int i = 0; i < nxny; i++) bpz[i] = bz[i];
455 greenpot(bpx, bpy, bpz, nx, ny);
456
457 // Then compute energy
458 if (computeFreeEnergy(bx_err, by_err, bx, by, bpx, bpy, dims,
459 &meanpot, &meanpot_err, &totpot, &totpot_err,
460 mask, bitmask, cdelt1, rsun_ref, rsun_obs))
461 {
462 meanpot = DRMS_MISSING_FLOAT;
463 totpot = DRMS_MISSING_FLOAT;
464 meanpot_err = DRMS_MISSING_FLOAT;
465 totpot_err = DRMS_MISSING_FLOAT;
466 }
467
468 // Set sharp keys
469 drms_setkey_float(sharpoutrec, "MEANPOT", meanpot);
470 mbobra 1.1 drms_setkey_float(sharpoutrec, "TOTPOT", totpot);
471 drms_setkey_float(sharpoutrec, "ERRMPOT", meanpot_err);
472 drms_setkey_float(sharpoutrec, "ERRTPOT", totpot_err);
473
474 // Set sharp cea keys
475 drms_setkey_float(sharpceaoutrec, "MEANPOT", meanpot);
476 drms_setkey_float(sharpceaoutrec, "TOTPOT", totpot);
477 drms_setkey_float(sharpceaoutrec, "ERRMPOT", meanpot_err);
478 drms_setkey_float(sharpceaoutrec, "ERRTPOT", totpot_err);
479 }
480
481 /***** MEANGAM, Example Function 3 ************************************/
482
483 if (meangamflag)
484 {
485 // First compute horizontal field
486 computeBh(bx_err, by_err, bh_err, bx, by, bz, bh, dims, &mean_hf, mask, bitmask);
487
488 // Then compute inclination angle, gamma
489 if (computeGamma(bz_err, bh_err, bx, by, bz, bh, dims, &mean_gamma, &mean_gamma_err,mask, bitmask))
490 {
491 mbobra 1.1 mean_gamma = DRMS_MISSING_FLOAT;
492 mean_gamma_err = DRMS_MISSING_FLOAT;
493 }
494
495 // Set sharp keys
496 drms_setkey_float(sharpoutrec, "MEANGAM", mean_gamma);
497 drms_setkey_float(sharpoutrec, "ERRGAM", mean_gamma_err);
498
499 // Set sharp cea keys
500 drms_setkey_float(sharpceaoutrec, "MEANGAM", mean_gamma);
501 drms_setkey_float(sharpceaoutrec, "ERRGAM", mean_gamma_err);
502 }
503
504 /***** MEANGBT, Example Function 5 (Requires Function 4) *************/
505
506 if (meangbtflag)
507 {
508 // First, compute Bt
509 computeB_total(bx_err, by_err, bz_err, bt_err, bx, by, bz, bt, dims, mask, bitmask);
510
511 // Then take the derivative of Bt
512 mbobra 1.1 if (computeBtotalderivative(bt, dims, &mean_derivative_btotal, mask, bitmask, derx_bt, dery_bt, bt_err,
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513 mbobra 1.12 &mean_derivative_btotal_err, err_termAt, err_termBt))
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514 mbobra 1.1 {
515 mean_derivative_btotal = DRMS_MISSING_FLOAT;
516 mean_derivative_btotal_err = DRMS_MISSING_FLOAT;
517 }
518
519 // Set sharp keys
520 drms_setkey_float(sharpoutrec, "MEANGBT", mean_derivative_btotal);
521 drms_setkey_float(sharpoutrec, "ERRBT", mean_derivative_btotal_err);
522
523 // Set sharp cea keys
524 drms_setkey_float(sharpceaoutrec, "MEANGBT", mean_derivative_btotal);
525 drms_setkey_float(sharpceaoutrec, "ERRBT", mean_derivative_btotal_err);
526 }
527
528 /***** MEANGBH, Example Function 6 (Requires Function 2) *************/
529
530 if (meangbhflag)
531 {
532 // First, compute Bh
533 computeBh(bx_err, by_err, bh_err, bx, by, bz, bh, dims, &mean_hf, mask, bitmask);
534
535 mbobra 1.1 // Then take the derivative of Bh
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536 mbobra 1.12 if (computeBhderivative(bh, bh_err, dims, &mean_derivative_bh, &mean_derivative_bh_err, mask, bitmask, derx_bh, dery_bh, err_termAh, err_termBh))
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537 mbobra 1.1 {
538 mean_derivative_bh = DRMS_MISSING_FLOAT;
539 mean_derivative_bh_err = DRMS_MISSING_FLOAT;
540 }
541
542 // Set sharp keys
543 drms_setkey_float(sharpoutrec, "MEANGBH", mean_derivative_bh);
544 drms_setkey_float(sharpoutrec, "ERRBH", mean_derivative_bh_err);
545
546 // Set sharp cea keys
547 drms_setkey_float(sharpceaoutrec, "MEANGBH", mean_derivative_bh);
548 drms_setkey_float(sharpceaoutrec, "ERRBH", mean_derivative_bh_err);
549 }
550
551 /***** MEANGBZ, Example Function 7 ************************************/
552
553 if (meangbzflag)
554 {
555 // Compute Bz derivative
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556 mbobra 1.12 if (computeBzderivative(bz, bz_err, dims, &mean_derivative_bz, &mean_derivative_bz_err, mask, bitmask, derx_bz, dery_bz, err_termA, err_termB))
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557 mbobra 1.1 {
558 mean_derivative_bz = DRMS_MISSING_FLOAT;
559 mean_derivative_bz_err = DRMS_MISSING_FLOAT;
560 }
561
562 // Set sharp keys
563 drms_setkey_float(sharpoutrec, "MEANGBZ", mean_derivative_bz);
564 drms_setkey_float(sharpoutrec, "ERRBZ", mean_derivative_bz_err);
565
566 // Set sharp cea keys
567 drms_setkey_float(sharpceaoutrec, "MEANGBZ", mean_derivative_bz);
568 drms_setkey_float(sharpceaoutrec, "ERRBZ", mean_derivative_bz_err);
569 }
570
571 /***** MEANJZD and TOTUSJZ, Example Function 9 (Requires Function 8) ***/
572
573 if (meanjzdflag || totusjzflag)
574 {
575 // First, compute Jz on all pixels
576 computeJz(bx_err, by_err, bx, by, dims, jz, jz_err, jz_err_squared, mask, bitmask, cdelt1, rsun_ref, rsun_obs,
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577 mbobra 1.11 derx, dery, err_term1, err_term2);
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578 mbobra 1.1
579 // Then take the sums of the appropriate pixels
580 if(computeJzsmooth(bx, by, dims, jz, jz_smooth, jz_err, jz_rms_err, jz_err_squared_smooth, &mean_jz,
581 &mean_jz_err, &us_i, &us_i_err, mask, bitmask, cdelt1,
582 rsun_ref, rsun_obs, derx, dery))
583
584
585 {
586 mean_jz = DRMS_MISSING_FLOAT;
587 us_i = DRMS_MISSING_FLOAT;
588 mean_jz_err = DRMS_MISSING_FLOAT;
589 us_i_err = DRMS_MISSING_FLOAT;
590 }
591
592 // Set sharp keys
593 drms_setkey_float(sharpoutrec, "MEANJZD", mean_jz);
594 drms_setkey_float(sharpoutrec, "TOTUSJZ", us_i);
595 drms_setkey_float(sharpoutrec, "ERRJZ", mean_jz_err);
596 drms_setkey_float(sharpoutrec, "ERRUSI", us_i_err);
597
598 // Set sharp cea keys
599 mbobra 1.1 drms_setkey_float(sharpceaoutrec, "MEANJZD", mean_jz);
600 drms_setkey_float(sharpceaoutrec, "TOTUSJZ", us_i);
601 drms_setkey_float(sharpceaoutrec, "ERRJZ", mean_jz_err);
602 drms_setkey_float(sharpceaoutrec, "ERRUSI", us_i_err);
603 }
604
605 /***** MEANALP, Example Function 10 (Requires Function 8)*********/
606
607 if (meanalpflag)
608 {
609 // First, compute Jz on all pixels
610 computeJz(bx_err, by_err, bx, by, dims, jz, jz_err, jz_err_squared, mask, bitmask, cdelt1, rsun_ref, rsun_obs,
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611 mbobra 1.11 derx, dery, err_term1, err_term2);
|
612 mbobra 1.1
613 // Then compute alpha quantities on select pixels
614 if (computeAlpha(jz_err, bz_err, bz, dims, jz, jz_smooth, &mean_alpha, &mean_alpha_err,
615 mask, bitmask, cdelt1, rsun_ref, rsun_obs))
616 {
617 mean_alpha = DRMS_MISSING_FLOAT;
618 mean_alpha_err = DRMS_MISSING_FLOAT;
619 }
620
621 // Set sharp keys
622 drms_setkey_float(sharpoutrec, "MEANALP", mean_alpha);
623 drms_setkey_float(sharpoutrec, "ERRALP", mean_alpha_err);
624
625 // Set sharp cea keys
626 drms_setkey_float(sharpceaoutrec, "MEANALP", mean_alpha);
627 drms_setkey_float(sharpceaoutrec, "ERRALP", mean_alpha_err);
628
629 }
630
631 /***** MEANJZH, TOTUSJH, ABSNJZH, Example Function 11 (Requires Function 8) ***/
632
633 mbobra 1.1 if (meanjzhflag || totusjhflag || absnjzhflag)
634 {
635 // First, compute Jz on all pixels
636 computeJz(bx_err, by_err, bx, by, dims, jz, jz_err, jz_err_squared, mask, bitmask, cdelt1, rsun_ref, rsun_obs,
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637 mbobra 1.11 derx, dery, err_term1, err_term2);
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638 mbobra 1.1
639 // Then compute helicity quantities on select pixels
640 if (computeHelicity(jz_err, jz_rms_err, bz_err, bz, dims, jz, &mean_ih, &mean_ih_err, &total_us_ih,
641 &total_abs_ih, &total_us_ih_err, &total_abs_ih_err, mask, bitmask, cdelt1, rsun_ref, rsun_obs))
642 {
643 mean_ih = DRMS_MISSING_FLOAT;
644 total_us_ih = DRMS_MISSING_FLOAT;
645 total_abs_ih = DRMS_MISSING_FLOAT;
646 mean_ih_err = DRMS_MISSING_FLOAT;
647 total_us_ih_err = DRMS_MISSING_FLOAT;
648 total_abs_ih_err = DRMS_MISSING_FLOAT;
649 }
650
651 // Set sharp keys
652 drms_setkey_float(sharpoutrec, "MEANJZH", mean_ih);
653 drms_setkey_float(sharpoutrec, "TOTUSJH", total_us_ih);
654 drms_setkey_float(sharpoutrec, "ABSNJZH", total_abs_ih);
655 drms_setkey_float(sharpoutrec, "ERRMIH", mean_ih_err);
656 drms_setkey_float(sharpoutrec, "ERRTUI", total_us_ih_err);
657 drms_setkey_float(sharpoutrec, "ERRTAI", total_abs_ih_err);
658
659 mbobra 1.1 // Set sharp cea keys
660 drms_setkey_float(sharpceaoutrec, "MEANJZH", mean_ih);
661 drms_setkey_float(sharpceaoutrec, "TOTUSJH", total_us_ih);
662 drms_setkey_float(sharpceaoutrec, "ABSNJZH", total_abs_ih);
663 drms_setkey_float(sharpceaoutrec, "ERRMIH", mean_ih_err);
664 drms_setkey_float(sharpceaoutrec, "ERRTUI", total_us_ih_err);
665 drms_setkey_float(sharpceaoutrec, "ERRTAI", total_abs_ih_err);
666 }
667
668 /***** SAVNCPP, Example Function 12 (Requires Function 8) *******************/
669
670 if (savncppflag)
671 {
672 // First, compute Jz on all pixels
673 computeJz(bx_err, by_err, bx, by, dims, jz, jz_err, jz_err_squared, mask, bitmask, cdelt1, rsun_ref, rsun_obs,
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674 mbobra 1.11 derx, dery, err_term1, err_term2);
|
675 mbobra 1.1
676 // Then compute sums of Jz on select pixels
677 if (computeSumAbsPerPolarity(jz_err, bz_err, bz, jz, dims, &totaljz, &totaljz_err,
678 mask, bitmask, cdelt1, rsun_ref, rsun_obs))
679 {
680 totaljz = DRMS_MISSING_FLOAT;
681 totaljz_err = DRMS_MISSING_FLOAT;
682 }
683
684 // Set sharp keys
685 drms_setkey_float(sharpoutrec, "SAVNCPP", totaljz);
686 drms_setkey_float(sharpoutrec, "ERRJHT", totaljz_err);
687
688 // Set sharp cea keys
689 drms_setkey_float(sharpceaoutrec, "SAVNCPP", totaljz);
690 drms_setkey_float(sharpceaoutrec, "ERRJHT", totaljz_err);
691 }
692
693 /***** MEANSHR and SHRGT45, Example Function 14 (Requires Keiji's code) **********/
694
695 if (meanshrflag || shrgt45flag)
696 mbobra 1.1 {
697 // First compute potential field
698 for (int i = 0; i < nxny; i++) bpz[i] = bz[i];
699 greenpot(bpx, bpy, bpz, nx, ny);
700
701 // Then compute shear angles
702 if (computeShearAngle(bx_err, by_err, bh_err, bx, by, bz, bpx, bpy, bpz, dims,
703 &meanshear_angle, &meanshear_angle_err, &area_w_shear_gt_45,
704 mask, bitmask))
705 {
706 meanshear_angle = DRMS_MISSING_FLOAT; // If fail, fill in NaN
707 area_w_shear_gt_45 = DRMS_MISSING_FLOAT;
708 meanshear_angle_err= DRMS_MISSING_FLOAT;
709 }
710
711 // Set sharp keys
712 drms_setkey_float(sharpoutrec, "MEANSHR", meanshear_angle);
713 drms_setkey_float(sharpoutrec, "SHRGT45", area_w_shear_gt_45);
714 drms_setkey_float(sharpoutrec, "ERRMSHA", meanshear_angle_err);
715
716 // Set sharp cea keys
717 mbobra 1.1 drms_setkey_float(sharpceaoutrec, "MEANSHR", meanshear_angle);
718 drms_setkey_float(sharpceaoutrec, "SHRGT45", area_w_shear_gt_45);
719 drms_setkey_float(sharpceaoutrec, "ERRMSHA", meanshear_angle_err);
720 }
721
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722 mbobra 1.8 /***** TOTFX, TOTFY, TOTFX, TOTBSQ, EPSX, EPSY, EPSZ , Example Function 16 (Lorentz forces) **********/
723
724 if (totfxflag || totfyflag || totfzflag || totbsqflag || epsxflag || epsyflag || epszflag)
725 {
726
727 // Compute Lorentz forces
728 if (computeLorentz(bx, by, bz, fx, fy, fz, dims, &totfx, &totfy, &totfz, &totbsq,
729 &epsx, &epsy, &epsz, mask, bitmask, cdelt1, rsun_ref, rsun_obs))
730 {
731 totfx = DRMS_MISSING_FLOAT;
732 totfy = DRMS_MISSING_FLOAT;
733 totfz = DRMS_MISSING_FLOAT;
734 totbsq = DRMS_MISSING_FLOAT;
735 epsx = DRMS_MISSING_FLOAT;
736 epsy = DRMS_MISSING_FLOAT;
737 epsz = DRMS_MISSING_FLOAT;
738 }
739
740 // Set sharp keys
741 drms_setkey_float(sharpoutrec, "TOTFX", totfx);
742 drms_setkey_float(sharpoutrec, "TOTFY", totfy);
743 mbobra 1.8 drms_setkey_float(sharpoutrec, "TOTFZ", totfz);
744 drms_setkey_float(sharpoutrec, "TOTBSQ",totbsq);
745 drms_setkey_float(sharpoutrec, "EPSX", epsx);
746 drms_setkey_float(sharpoutrec, "EPSY", epsy);
747 drms_setkey_float(sharpoutrec, "EPSZ", epsz);
748
749 // Set sharp cea keys
750 drms_setkey_float(sharpceaoutrec, "TOTFX", totfx);
751 drms_setkey_float(sharpceaoutrec, "TOTFY", totfy);
752 drms_setkey_float(sharpceaoutrec, "TOTFZ", totfz);
753 drms_setkey_float(sharpceaoutrec, "TOTBSQ",totbsq);
754 drms_setkey_float(sharpceaoutrec, "EPSX", epsx);
755 drms_setkey_float(sharpceaoutrec, "EPSY", epsy);
756 drms_setkey_float(sharpceaoutrec, "EPSZ", epsz);
757
758 }
759
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760 mbobra 1.1 /******************************* END FLAGS **********************************/
761
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762 mbobra 1.10
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763 mbobra 1.1 drms_free_array(bitmaskArray);
764 drms_free_array(maskArray);
765 drms_free_array(bxArray);
766 drms_free_array(byArray);
767 drms_free_array(bzArray);
768 drms_free_array(bx_errArray);
769 drms_free_array(by_errArray);
770 drms_free_array(bz_errArray);
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771 mbobra 1.6 drms_free_array(losArray);
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772 mbobra 1.10
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773 mbobra 1.11 // free the arrays that are related to the lorentz calculation
774 free(fx); free(fy); free(fz);
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775 mbobra 1.1 //used for select calculations
776 free(bh); free(bt); free(jz);
777 free(bpx); free(bpy); free(bpz);
778 free(derx); free(dery);
779 free(derx_bt); free(dery_bt);
780 free(derx_bz); free(dery_bz);
781 free(derx_bh); free(dery_bh);
782 free(bt_err); free(bh_err); free(jz_err);
783 free(jz_err_squared); free(jz_rms_err);
784 free(cvsinfoall);
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785 mbobra 1.7
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786 mbobra 1.6 free(rim);
787 free(p1p0);
788 free(p1n0);
789 free(p1p);
790 free(p1n);
791 free(p1);
792 free(pmap);
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793 mbobra 1.7 free(p1pad);
794 free(pmapn);
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795 mbobra 1.12
796 // free the arrays that are related to the numerical derivatives
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797 mbobra 1.11 free(err_term2);
798 free(err_term1);
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799 mbobra 1.12 free(err_termB);
800 free(err_termA);
801 free(err_termBt);
802 free(err_termAt);
803 free(err_termBh);
804 free(err_termAh);
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805 mbobra 1.11
806 } //endfor
807
808 drms_close_records(sharpinrecset, DRMS_FREE_RECORD);
809 drms_close_records(sharpceainrecset, DRMS_FREE_RECORD);
810
811 drms_close_records(sharpoutrecset, DRMS_INSERT_RECORD);
812 drms_close_records(sharpceaoutrecset, DRMS_INSERT_RECORD);
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813 mbobra 1.6
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814 mbobra 1.9 printf("Success=%d\n",sameflag);
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815 arta 1.3 return 0;
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816 mbobra 1.1 } // DoIt
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