JSOC/proj/sharp/apps/update_sharp_keys.c - annotate

Return to update_sharp_keys.c CVS log

Up to [Development] / JSOC / proj / sharp / apps

1 mbobra 1.1 /* 2 * MODULE NAME: update_sharp_keys.c 3 * 4 * DESCRIPTION: This module recalculates SHARP keywords. This is accomplished by 5 * cloning a record, recalculating keywords of choice (i.e., user input), 6 * and pointing to the same segments as the old record. Associated error keys 7 * are computed by default. 8 * 9 * This module accounts for versioning by appending to the keyword CODEVER7 and HISTORY: 10 * CODEVER7 will contain multiple lines: the production build of sharp.c, the 11 * production build of include file sw_functions.c, and the production build 12 * of update_sharp_keys.c. HISTORY will include a human-readable sentence about which 13 * keywords were updated. 14 * 15 * This module does not produce segments. 16 * 17 * INPUTS : -- DRMS SHARP series 18 * -- DRMS SHARP CEA series 19 * -- HARPNUM 20 * -- comma separated list of keywords to recalculate 21 * 22 mbobra 1.1 * AUTHOR : Monica Bobra 23 * 24 * Version : v0.0 Jun 14 2013
25 mbobra 1.6 * v0.1 Feb 11 2014 Added different input and output series
26 mbobra 1.1 * 27 * EXAMPLE :
28 mbobra 1.6 * update_sharp_keys sharpseriesin=hmi.sharp_720s sharpceaseriesin=hmi.sharp_cea_720s // 29 * HARPNUM=1 sharpseriesout=hmi.sharp_720s sharpceaseriesout=hmi.sharp_cea_720s keylist=USFLUX,TOTPOT
30 mbobra 1.1 * 31 / 32 33 / Include files / 34 #include <stdio.h> 35 #include <stdlib.h> 36 #include <time.h> 37 #include <sys/time.h> 38 #include <math.h> 39 #include <string.h> 40 #include "jsoc_main.h" 41 #include "astro.h" 42 #include "fstats.h" 43 #include "cartography.c" 44 #include "fresize.h" 45 #include "finterpolate.h" 46 #include "img2helioVector.c" 47 #include "copy_me_keys.c" 48 #include "errorprop.c" 49 #include "sw_functions.c" 50 #include <mkl_blas.h> 51 mbobra 1.1 #include <mkl_service.h> 52 #include <mkl_lapack.h> 53 #include <mkl_vml_functions.h> 54 #include <omp.h> 55 56 / Define values / 57 #define PI (M_PI) 58 #define RADSINDEG (PI/180.) 59 #define ARRLENGTH(ARR) (sizeof(ARR) / sizeof(ARR[0])) 60 #define DIE(msg) {fflush(stdout); fprintf(stderr,"%s, status=%d\n", msg, status); return(status);} 61 #define SHOW(msg) {printf("%s", msg); fflush(stdout);} 62 63 char module_name = "update_sharp_keys"; /* Module name */
64 mbobra 1.6 char version_id = "2014 Feb 12"; / Version number */
65 mbobra 1.1 66 ModuleArgs_t module_args[] = 67 {
68 mbobra 1.6 {ARG_STRING, "sharpseriesin", NULL, "Input Sharp dataseries"}, 69 {ARG_STRING, "sharpceaseriesin", NULL, "Input Sharp CEA dataseries"}, 70 {ARG_STRING, "sharpseriesout", NULL, "Output Sharp dataseries"}, 71 {ARG_STRING, "sharpceaseriesout", NULL, "Output Sharp CEA dataseries"},
72 mbobra 1.1 {ARG_INT, "HARPNUM", NULL, "HARP number"}, 73 {ARG_STRING, "keylist", NULL, "comma separated list of keywords to update"}, 74 {ARG_END} 75 }; 76 77 78 int DoIt(void) 79 { 80 int errbufstat=setvbuf(stderr, NULL, _IONBF, BUFSIZ); 81 int outbufstat=setvbuf(stdout, NULL, _IONBF, BUFSIZ); 82 83 int status = DRMS_SUCCESS; 84 int nrecs, irec; 85 86 /* Keywords */ 87 float mean_vf; 88 float absFlux; 89 float count_mask; 90 float mean_hf; 91 float mean_gamma; 92 float mean_derivative_btotal; 93 mbobra 1.1 float mean_derivative_bh; 94 float mean_derivative_bz; 95 float mean_jz; 96 float us_i; 97 float mean_alpha; 98 float mean_ih; 99 float total_us_ih; 100 float total_abs_ih; 101 float totaljz; 102 float totpot; 103 float meanpot; 104 float area_w_shear_gt_45; 105 float meanshear_angle; 106 float area_w_shear_gt_45h; 107 float meanshear_angleh; 108 float mean_derivative_btotal_err; 109 float mean_vf_err; 110 float mean_gamma_err; 111 float mean_derivative_bh_err; 112 float mean_derivative_bz_err; 113 float mean_jz_err; 114 mbobra 1.1 float us_i_err; 115 float mean_alpha_err; 116 float mean_ih_err; 117 float total_us_ih_err; 118 float total_abs_ih_err; 119 float totaljz_err; 120 float meanpot_err; 121 float totpot_err;
122 mbobra 1.6 float Rparam;
123 mbobra 1.1 float meanshear_angle_err;
124 mbobra 1.8 float totfx; 125 float totfy; 126 float totfz; 127 float totbsq; 128 float epsx; 129 float epsy; 130 float epsz; 131
132 mbobra 1.6 char sharpseriesin = (char ) params_get_str(&cmdparams, "sharpseriesin"); 133 char sharpceaseriesin = (char ) params_get_str(&cmdparams, "sharpceaseriesin"); 134 char sharpseriesout = (char ) params_get_str(&cmdparams, "sharpseriesout"); 135 char sharpceaseriesout = (char ) params_get_str(&cmdparams, "sharpceaseriesout"); 136 137 int sameflag = strcmp(sharpseriesin, sharpseriesout) == 0; 138 int testflag = strcmp(sharpceaseriesin, sharpceaseriesout) == 0; 139 if (testflag != sameflag) 140 DIE("Either both outputs must be the same as their inputs, or both be different.");
141 mbobra 1.1 142 int harpnum = params_get_int(&cmdparams, "HARPNUM");
143 mbobra 1.6
144 mbobra 1.1 char sharpquery[256]; 145 char sharpceaquery[256];
146 mbobra 1.6 printf("sameflag = %d\n", sameflag); 147 printf("testflag = %d\n", testflag); 148 sprintf(sharpceaquery, "%s[%d]\n", sharpceaseriesin,harpnum); 149 printf(sharpceaquery, "%s[%d]\n", sharpceaseriesin,harpnum);
150 mbobra 1.1
151 mbobra 1.6 sprintf(sharpquery, "%s[%d]\n", sharpseriesin,harpnum); 152 sprintf(sharpquery, "%s[%d]\n", sharpseriesin,harpnum);
153 mbobra 1.1
154 mbobra 1.6 DRMS_RecordSet_t *sharpinrecset= drms_open_records(drms_env, sharpquery, &status);
155 mbobra 1.1 if (status != DRMS_SUCCESS) 156 DIE("Problem opening sharp recordset.");
157 mbobra 1.6 nrecs=sharpinrecset->n; 158 if (nrecs == 0)
159 mbobra 1.1 DIE("Sharp recordset contains no records.");
160 mbobra 1.6 printf("nrecs=%d\n",nrecs);
161 mbobra 1.1 162 DRMS_RecordSet_t *sharpceainrecset = drms_open_records(drms_env, sharpceaquery, &status); 163 if (status != DRMS_SUCCESS) 164 DIE("Problem opening sharp cea recordset.");
165 mbobra 1.6 if (sharpceainrecset->n != nrecs) 166 DIE("Sharp cea recordset differs from sharp recordset."); 167 168 DRMS_RecordSet_t sharpoutrecset, sharpceaoutrecset; 169 if (sameflag) 170 { 171 sharpoutrecset = drms_clone_records(sharpinrecset, DRMS_PERMANENT, DRMS_SHARE_SEGMENTS, &status); 172 if (status != DRMS_SUCCESS) 173 DIE("Problem cloning sharp records."); 174 sharpceaoutrecset = drms_clone_records(sharpceainrecset, DRMS_PERMANENT, DRMS_SHARE_SEGMENTS, &status);
175 mbobra 1.1 if (status != DRMS_SUCCESS) 176 DIE("Problem cloning sharp cea records.");
177 mbobra 1.6 } 178 else 179 { 180 sharpoutrecset = drms_create_records(drms_env, nrecs, sharpseriesout, DRMS_PERMANENT, &status); 181 if (status != DRMS_SUCCESS) 182 DIE("Problem creating sharp records."); 183 sharpceaoutrecset = drms_create_records(drms_env, nrecs, sharpceaseriesout, DRMS_PERMANENT, &status); 184 if (status != DRMS_SUCCESS) 185 DIE("Problem creating sharp cea records."); 186 } 187
188 mbobra 1.1 189 char keylist = (char ) params_get_str(&cmdparams, "keylist"); 190 191 // Flags to indicate which keyword will be recalculated 192 int meanvfflag = (strstr(keylist,"USFLUX") != NULL); // generalize so that lowercase is acceptable 193 int totpotflag = (strstr(keylist,"TOTPOT") != NULL); 194 int meangamflag = (strstr(keylist,"MEANGAM") != NULL); 195 int meangbtflag = (strstr(keylist,"MEANGBT") != NULL); 196 int meangbzflag = (strstr(keylist,"MEANGBZ") != NULL); 197 int meangbhflag = (strstr(keylist,"MEANGBH") != NULL); 198 int meanjzdflag = (strstr(keylist,"MEANJZD") != NULL); 199 int totusjzflag = (strstr(keylist,"TOTUSJZ") != NULL); 200 int meanalpflag = (strstr(keylist,"MEANALP") != NULL); 201 int meanjzhflag = (strstr(keylist,"MEANJZH") != NULL); 202 int totusjhflag = (strstr(keylist,"TOTUSJH") != NULL); 203 int absnjzhflag = (strstr(keylist,"ABSNJZH") != NULL); 204 int savncppflag = (strstr(keylist,"SAVNCPP") != NULL); 205 int meanpotflag = (strstr(keylist,"MEANPOT") != NULL); 206 int meanshrflag = (strstr(keylist,"MEANSHR") != NULL); 207 int shrgt45flag = (strstr(keylist,"SHRGT45") != NULL);
208 mbobra 1.6 int r_valueflag = (strstr(keylist,"R_VALUE") != NULL);
209 mbobra 1.8 int totbsqflag = (strstr(keylist,"TOTBSQ") != NULL); 210 int totfxflag = (strstr(keylist,"TOTFX") != NULL); 211 int totfyflag = (strstr(keylist,"TOTFY") != NULL); 212 int totfzflag = (strstr(keylist,"TOTFZ") != NULL); 213 int epsxflag = (strstr(keylist,"EPSX") != NULL); 214 int epsyflag = (strstr(keylist,"EPSY") != NULL); 215 int epszflag = (strstr(keylist,"EPSZ") != NULL); 216
217 mbobra 1.1 DRMS_Record_t sharpinrec = sharpinrecset->records[0]; 218 DRMS_Record_t sharpceainrec = sharpceainrecset->records[0]; 219 DRMS_Segment_t inseg = drms_segment_lookup(sharpceainrec, "Br"); 220 int nx = inseg->axis[0]; 221 int ny = inseg->axis[1]; 222 int nxny = nx ny; 223 int dims[2] = {nx, ny};
224 mbobra 1.6
225 mbobra 1.1 // Temp arrays 226 float bh = (float ) (malloc(nxny * sizeof(float))); 227 float bt = (float ) (malloc(nxny * sizeof(float))); 228 float jz = (float ) (malloc(nxny * sizeof(float))); 229 float bpx = (float ) (malloc(nxny * sizeof(float))); 230 float bpy = (float ) (malloc(nxny * sizeof(float))); 231 float bpz = (float ) (malloc(nxny * sizeof(float))); 232 float derx = (float ) (malloc(nxny * sizeof(float))); 233 float dery = (float ) (malloc(nxny * sizeof(float))); 234 float derx_bt = (float ) (malloc(nxny * sizeof(float))); 235 float dery_bt = (float ) (malloc(nxny * sizeof(float))); 236 float derx_bh = (float ) (malloc(nxny * sizeof(float))); 237 float dery_bh = (float ) (malloc(nxny * sizeof(float))); 238 float derx_bz = (float ) (malloc(nxny * sizeof(float))); 239 float dery_bz = (float ) (malloc(nxny * sizeof(float))); 240 float bt_err = (float ) (malloc(nxny * sizeof(float))); 241 float bh_err = (float ) (malloc(nxny * sizeof(float))); 242 float jz_err = (float ) (malloc(nxny * sizeof(float))); 243 float jz_err_squared = (float ) (malloc(nxny * sizeof(float))); 244 float jz_rms_err = (float ) (malloc(nxny * sizeof(float))); 245 float jz_err_squared_smooth = (float ) (malloc(nxny * sizeof(float))); 246 mbobra 1.1 float jz_smooth = (float ) (malloc(nxny * sizeof(float))); 247 248 // ephemeris variables 249 float cdelt1_orig, cdelt1, dsun_obs, imcrpix1, imcrpix2, crpix1, crpix2; 250 double rsun_ref, rsun_obs; 251 252 // outrecords
253 mbobra 1.6 DRMS_Record_t sharpoutrec, sharpceaoutrec, *testrec;
254 mbobra 1.1 255 // prepare to set CODEVER7 (CVS Version of the SHARP module) 256 char cvsinfo0; 257 char history0;
258 mbobra 1.8 char *cvsinfo1 = strdup("$Id: update_sharp_keys.c,v 1.7 2014/06/02 19:47:26 mbobra Exp $");
259 mbobra 1.1 char cvsinfo2 = sw_functions_version(); 260 char cvsinfoall = (char *)malloc(2048); 261 char historyofthemodule[2048]; 262 cvsinfo0 = drms_getkey_string(sharpinrec, "CODEVER7", &status); 263 strcpy(cvsinfoall,cvsinfo0); 264 strcat(cvsinfoall,"\n"); 265 strcat(cvsinfoall,cvsinfo2); 266 267 // prepare to set HISTORY (History of the data) 268 char timebuf[1024]; 269 float UNIX_epoch = -220924792.000; 270 sprint_time(timebuf, (double)time(NULL) + UNIX_epoch, "ISO", 0); 271 sprintf(historyofthemodule,"The following keywords were re-computed on %s: %s.",timebuf,keylist); 272 printf("historyofthemodule=%s\n",historyofthemodule); 273 history0 = drms_getkey_string(sharpinrec, "HISTORY", &status); 274 strcat(historyofthemodule,"\n"); 275 strcat(historyofthemodule,history0); 276
277 mbobra 1.6 // grab one record such that we can malloc the R-parameter calculation arrays outside of the loop 278 // assume scale = round(2./cdelt1) does not change for any given HARP 279 testrec = sharpceainrecset->records[nrecs/2]; 280 dsun_obs = drms_getkey_float(testrec, "DSUN_OBS", &status); 281 rsun_ref = drms_getkey_double(testrec, "RSUN_REF", &status); 282 cdelt1_orig = drms_getkey_float(testrec, "CDELT1", &status); 283 cdelt1 = (atan((rsun_refcdelt1_origRADSINDEG)/(dsun_obs)))(1/RADSINDEG)(3600.); 284 int scale = round(2.0/cdelt1); 285 int nx1 = nx/scale; 286 int ny1 = ny/scale;
287 mbobra 1.7 int nxp = nx1+40; 288 int nyp = ny1+40;
289 mbobra 1.6 290 if (nx1 > floor((nx-1)/scale + 1) ) 291 DIE("X-dimension of output array in fsample() is too large."); 292 if (ny1 > floor((ny-1)/scale + 1) ) 293 DIE("Y-dimension of output array in fsample() is too large."); 294 295 // malloc some arrays for the R parameter calculation
296 mbobra 1.7 float rim = (float )malloc(nx1ny1sizeof(float)); 297 float p1p0 = (float )malloc(nx1ny1sizeof(float)); 298 float p1n0 = (float )malloc(nx1ny1sizeof(float)); 299 float p1p = (float )malloc(nx1ny1sizeof(float)); 300 float p1n = (float )malloc(nx1ny1sizeof(float)); 301 float p1 = (float )malloc(nx1ny1sizeof(float)); 302 float pmap = (float )malloc(nxpnypsizeof(float)); 303 float p1pad = (float )malloc(nxpnypsizeof(float)); 304 float pmapn = (float )malloc(nx1ny1sizeof(float));
305 mbobra 1.8 306 // define some arrays for the lorentz force calculation 307 float fx = (float ) (malloc(nxny * sizeof(float))); 308 float fy = (float ) (malloc(nxny * sizeof(float))); 309 float fz = (float ) (malloc(nxny * sizeof(float))); 310
311 mbobra 1.7
312 mbobra 1.1 for (irec=0;irec<nrecs;irec++) 313 { 314 // Get emphemeris
315 mbobra 1.7 sharpinrec = sharpinrecset->records[irec];
316 mbobra 1.6 sharpceainrec = sharpceainrecset->records[irec];
317 mbobra 1.7 cdelt1_orig = drms_getkey_float(sharpceainrec, "CDELT1", &status); 318 dsun_obs = drms_getkey_float(sharpinrec, "DSUN_OBS", &status); 319 rsun_ref = drms_getkey_double(sharpinrec, "RSUN_REF", &status); 320 rsun_obs = drms_getkey_double(sharpinrec, "RSUN_OBS", &status); 321 imcrpix1 = drms_getkey_float(sharpinrec, "IMCRPIX1", &status); 322 imcrpix2 = drms_getkey_float(sharpinrec, "IMCRPIX2", &status); 323 crpix1 = drms_getkey_float(sharpinrec, "CRPIX1", &status); 324 crpix2 = drms_getkey_float(sharpinrec, "CRPIX2", &status);
325 mbobra 1.6
326 mbobra 1.1 sharpoutrec = sharpoutrecset->records[irec]; 327 sharpceaoutrec = sharpceaoutrecset->records[irec];
328 mbobra 1.6 if (!sameflag) 329 { 330 drms_copykeys(sharpoutrec, sharpinrec, 0, kDRMS_KeyClass_Explicit); 331 drms_copykeys(sharpceaoutrec, sharpceainrec, 0, kDRMS_KeyClass_Explicit); 332 } 333 334 TIME trec, tnow, UNIX_epoch = -220924792.000; /* 1970.01.01_00:00:00_UTC */ 335 tnow = (double)time(NULL); 336 tnow += UNIX_epoch;
337 mbobra 1.1
338 mbobra 1.6 // set CODEVER7 and HISTORY and DATE
339 mbobra 1.1 drms_setkey_string(sharpoutrec, "CODEVER7", cvsinfoall); 340 drms_setkey_string(sharpoutrec,"HISTORY",historyofthemodule); 341 drms_setkey_string(sharpceaoutrec, "CODEVER7", cvsinfoall); 342 drms_setkey_string(sharpceaoutrec,"HISTORY",historyofthemodule);
343 mbobra 1.6 drms_setkey_time(sharpoutrec,"DATE",tnow); 344 drms_setkey_time(sharpceaoutrec,"DATE",tnow);
345 mbobra 1.1 346 // Get bx, by, bz, mask 347 // Use HARP (Turmon) bitmap as a threshold on spaceweather quantities
348 mbobra 1.6 DRMS_Segment_t *bitmaskSeg = drms_segment_lookup(sharpceainrec, "bitmap");
349 mbobra 1.1 DRMS_Array_t bitmaskArray = drms_segment_read(bitmaskSeg, DRMS_TYPE_INT, &status); 350 int bitmask = (int *) bitmaskArray->data; // get the previously made mask array 351 352 //Use conf_disambig map as a threshold on spaceweather quantities
353 mbobra 1.6 DRMS_Segment_t *maskSeg = drms_segment_lookup(sharpceainrec, "conf_disambig");
354 mbobra 1.1 DRMS_Array_t maskArray = drms_segment_read(maskSeg, DRMS_TYPE_INT, &status); 355 if (status != DRMS_SUCCESS) 356 DIE("No CONF_DISAMBIG segment."); 357 int mask = (int *) maskArray->data; // get the previously made mask array 358
359 mbobra 1.6 //Use magnetogram map to compute R 360 DRMS_Segment_t losSeg = drms_segment_lookup(sharpceainrec, "magnetogram"); 361 DRMS_Array_t losArray = drms_segment_read(losSeg, DRMS_TYPE_FLOAT, &status); 362 float los = (float ) losArray->data; // los 363 364 DRMS_Segment_t *bxSeg = drms_segment_lookup(sharpceainrec, "Bp");
365 mbobra 1.1 DRMS_Array_t bxArray = drms_segment_read(bxSeg, DRMS_TYPE_FLOAT, &status); 366 float bx = (float *) bxArray->data; // bx 367
368 mbobra 1.6 DRMS_Segment_t *bySeg = drms_segment_lookup(sharpceainrec, "Bt");
369 mbobra 1.1 DRMS_Array_t byArray = drms_segment_read(bySeg, DRMS_TYPE_FLOAT, &status); 370 float by = (float ) byArray->data; // by 371 for (int i = 0; i < nxny; i++) by[i] = -1; 372
373 mbobra 1.6 DRMS_Segment_t *bzSeg = drms_segment_lookup(sharpceainrec, "Br");
374 mbobra 1.1 DRMS_Array_t bzArray = drms_segment_read(bzSeg, DRMS_TYPE_FLOAT, &status); 375 float bz = (float *) bzArray->data; // bz 376
377 mbobra 1.6 DRMS_Segment_t *bz_errSeg = drms_segment_lookup(sharpceainrec, "Br_err");
378 mbobra 1.1 DRMS_Array_t bz_errArray = drms_segment_read(bz_errSeg, DRMS_TYPE_FLOAT, &status); 379 float bz_err = (float *) bz_errArray->data; // bz_err 380
381 mbobra 1.6 DRMS_Segment_t *by_errSeg = drms_segment_lookup(sharpceainrec, "Bt_err");
382 mbobra 1.1 DRMS_Array_t by_errArray = drms_segment_read(by_errSeg, DRMS_TYPE_FLOAT, &status); 383 float by_err = (float *) by_errArray->data; // by_err 384
385 mbobra 1.6 DRMS_Segment_t *bx_errSeg = drms_segment_lookup(sharpceainrec, "Bp_err");
386 mbobra 1.1 DRMS_Array_t bx_errArray = drms_segment_read(bx_errSeg, DRMS_TYPE_FLOAT, &status); 387 float bx_err = (float *) bx_errArray->data; // bx_err 388
389 mbobra 1.6 /*** USFLUX, Example Function 1 ***********************************/
390 mbobra 1.1 if (meanvfflag) 391 { 392 // Compute unsigned flux 393 if (computeAbsFlux(bz_err, bz , dims, &absFlux, &mean_vf, &mean_vf_err, 394 &count_mask, mask, bitmask, cdelt1, rsun_ref, rsun_obs)) 395 { 396 mean_vf = DRMS_MISSING_FLOAT; 397 mean_vf_err = DRMS_MISSING_FLOAT; 398 count_mask = DRMS_MISSING_INT; 399 } 400 401 drms_setkey_float(sharpoutrec, "USFLUX", mean_vf); 402 drms_setkey_float(sharpoutrec, "CMASK", count_mask); 403 drms_setkey_float(sharpoutrec, "ERRVF", mean_vf_err); 404 405 drms_setkey_float(sharpceaoutrec, "USFLUX", mean_vf); 406 drms_setkey_float(sharpceaoutrec, "CMASK", count_mask); 407 drms_setkey_float(sharpceaoutrec, "ERRVF", mean_vf_err); 408 }
409 mbobra 1.6 410 /*** RPARAM, Example Function 14 ***********************************/ 411 if (r_valueflag) 412 { 413 if (computeR(bz_err, los , dims, &Rparam, cdelt1, rim, p1p0, p1n0,
414 mbobra 1.7 p1p, p1n, p1, pmap, nx1, ny1, scale, p1pad, nxp, nyp, pmapn)) 415
416 mbobra 1.6 { 417 Rparam = DRMS_MISSING_FLOAT; 418 } 419 420 drms_setkey_float(sharpoutrec, "R_VALUE", Rparam); 421 drms_setkey_float(sharpceaoutrec, "R_VALUE", Rparam); 422 423 } 424
425 mbobra 1.1 /*** MEANPOT and TOTPOT, Example Function 13 (Requires Keiji's code) / 426 427 if (totpotflag \|\| meanpotflag) 428 { 429 // First compute potential field 430 for (int i = 0; i < nxny; i++) bpz[i] = bz[i]; 431 greenpot(bpx, bpy, bpz, nx, ny); 432 433 // Then compute energy 434 if (computeFreeEnergy(bx_err, by_err, bx, by, bpx, bpy, dims, 435 &meanpot, &meanpot_err, &totpot, &totpot_err, 436 mask, bitmask, cdelt1, rsun_ref, rsun_obs)) 437 { 438 meanpot = DRMS_MISSING_FLOAT; 439 totpot = DRMS_MISSING_FLOAT; 440 meanpot_err = DRMS_MISSING_FLOAT; 441 totpot_err = DRMS_MISSING_FLOAT; 442 } 443 444 // Set sharp keys 445 drms_setkey_float(sharpoutrec, "MEANPOT", meanpot); 446 mbobra 1.1 drms_setkey_float(sharpoutrec, "TOTPOT", totpot); 447 drms_setkey_float(sharpoutrec, "ERRMPOT", meanpot_err); 448 drms_setkey_float(sharpoutrec, "ERRTPOT", totpot_err); 449 450 // Set sharp cea keys 451 drms_setkey_float(sharpceaoutrec, "MEANPOT", meanpot); 452 drms_setkey_float(sharpceaoutrec, "TOTPOT", totpot); 453 drms_setkey_float(sharpceaoutrec, "ERRMPOT", meanpot_err); 454 drms_setkey_float(sharpceaoutrec, "ERRTPOT", totpot_err); 455 } 456 457 /*** MEANGAM, Example Function 3 ********************************/ 458 459 if (meangamflag) 460 { 461 // First compute horizontal field 462 computeBh(bx_err, by_err, bh_err, bx, by, bz, bh, dims, &mean_hf, mask, bitmask); 463 464 // Then compute inclination angle, gamma 465 if (computeGamma(bz_err, bh_err, bx, by, bz, bh, dims, &mean_gamma, &mean_gamma_err,mask, bitmask)) 466 { 467 mbobra 1.1 mean_gamma = DRMS_MISSING_FLOAT; 468 mean_gamma_err = DRMS_MISSING_FLOAT; 469 } 470 471 // Set sharp keys 472 drms_setkey_float(sharpoutrec, "MEANGAM", mean_gamma); 473 drms_setkey_float(sharpoutrec, "ERRGAM", mean_gamma_err); 474 475 // Set sharp cea keys 476 drms_setkey_float(sharpceaoutrec, "MEANGAM", mean_gamma); 477 drms_setkey_float(sharpceaoutrec, "ERRGAM", mean_gamma_err); 478 } 479 480 /* MEANGBT, Example Function 5 (Requires Function 4) *********/ 481 482 if (meangbtflag) 483 { 484 // First, compute Bt 485 computeB_total(bx_err, by_err, bz_err, bt_err, bx, by, bz, bt, dims, mask, bitmask); 486 487 // Then take the derivative of Bt 488 mbobra 1.1 if (computeBtotalderivative(bt, dims, &mean_derivative_btotal, mask, bitmask, derx_bt, dery_bt, bt_err, 489 &mean_derivative_btotal_err)) 490 { 491 mean_derivative_btotal = DRMS_MISSING_FLOAT; 492 mean_derivative_btotal_err = DRMS_MISSING_FLOAT; 493 } 494 495 // Set sharp keys 496 drms_setkey_float(sharpoutrec, "MEANGBT", mean_derivative_btotal); 497 drms_setkey_float(sharpoutrec, "ERRBT", mean_derivative_btotal_err); 498 499 // Set sharp cea keys 500 drms_setkey_float(sharpceaoutrec, "MEANGBT", mean_derivative_btotal); 501 drms_setkey_float(sharpceaoutrec, "ERRBT", mean_derivative_btotal_err); 502 } 503 504 /* MEANGBH, Example Function 6 (Requires Function 2) *********/ 505 506 if (meangbhflag) 507 { 508 // First, compute Bh 509 mbobra 1.1 computeBh(bx_err, by_err, bh_err, bx, by, bz, bh, dims, &mean_hf, mask, bitmask); 510 511 // Then take the derivative of Bh 512 if (computeBhderivative(bh, bh_err, dims, &mean_derivative_bh, &mean_derivative_bh_err, mask, bitmask, derx_bh, dery_bh)) 513 { 514 mean_derivative_bh = DRMS_MISSING_FLOAT; 515 mean_derivative_bh_err = DRMS_MISSING_FLOAT; 516 } 517 518 // Set sharp keys 519 drms_setkey_float(sharpoutrec, "MEANGBH", mean_derivative_bh); 520 drms_setkey_float(sharpoutrec, "ERRBH", mean_derivative_bh_err); 521 522 // Set sharp cea keys 523 drms_setkey_float(sharpceaoutrec, "MEANGBH", mean_derivative_bh); 524 drms_setkey_float(sharpceaoutrec, "ERRBH", mean_derivative_bh_err); 525 } 526 527 /* MEANGBZ, Example Function 7 ********************************/ 528 529 if (meangbzflag) 530 mbobra 1.1 { 531 // Compute Bz derivative 532 if (computeBzderivative(bz, bz_err, dims, &mean_derivative_bz, &mean_derivative_bz_err, mask, bitmask, derx_bz, dery_bz)) 533 { 534 mean_derivative_bz = DRMS_MISSING_FLOAT; 535 mean_derivative_bz_err = DRMS_MISSING_FLOAT; 536 } 537 538 // Set sharp keys 539 drms_setkey_float(sharpoutrec, "MEANGBZ", mean_derivative_bz); 540 drms_setkey_float(sharpoutrec, "ERRBZ", mean_derivative_bz_err); 541 542 // Set sharp cea keys 543 drms_setkey_float(sharpceaoutrec, "MEANGBZ", mean_derivative_bz); 544 drms_setkey_float(sharpceaoutrec, "ERRBZ", mean_derivative_bz_err); 545 } 546 547 /* MEANJZD and TOTUSJZ, Example Function 9 (Requires Function 8) / 548 549 if (meanjzdflag \|\| totusjzflag) 550 { 551 mbobra 1.1 // First, compute Jz on all pixels 552 computeJz(bx_err, by_err, bx, by, dims, jz, jz_err, jz_err_squared, mask, bitmask, cdelt1, rsun_ref, rsun_obs, 553 derx, dery); 554 555 // Then take the sums of the appropriate pixels 556 if(computeJzsmooth(bx, by, dims, jz, jz_smooth, jz_err, jz_rms_err, jz_err_squared_smooth, &mean_jz, 557 &mean_jz_err, &us_i, &us_i_err, mask, bitmask, cdelt1, 558 rsun_ref, rsun_obs, derx, dery)) 559 560 561 { 562 mean_jz = DRMS_MISSING_FLOAT; 563 us_i = DRMS_MISSING_FLOAT; 564 mean_jz_err = DRMS_MISSING_FLOAT; 565 us_i_err = DRMS_MISSING_FLOAT; 566 } 567 568 // Set sharp keys 569 drms_setkey_float(sharpoutrec, "MEANJZD", mean_jz); 570 drms_setkey_float(sharpoutrec, "TOTUSJZ", us_i); 571 drms_setkey_float(sharpoutrec, "ERRJZ", mean_jz_err); 572 mbobra 1.1 drms_setkey_float(sharpoutrec, "ERRUSI", us_i_err); 573 574 // Set sharp cea keys 575 drms_setkey_float(sharpceaoutrec, "MEANJZD", mean_jz); 576 drms_setkey_float(sharpceaoutrec, "TOTUSJZ", us_i); 577 drms_setkey_float(sharpceaoutrec, "ERRJZ", mean_jz_err); 578 drms_setkey_float(sharpceaoutrec, "ERRUSI", us_i_err); 579 } 580 581 /** MEANALP, Example Function 10 (Requires Function 8)*****/ 582 583 if (meanalpflag) 584 { 585 // First, compute Jz on all pixels 586 computeJz(bx_err, by_err, bx, by, dims, jz, jz_err, jz_err_squared, mask, bitmask, cdelt1, rsun_ref, rsun_obs, 587 derx, dery); 588 589 // Then compute alpha quantities on select pixels 590 if (computeAlpha(jz_err, bz_err, bz, dims, jz, jz_smooth, &mean_alpha, &mean_alpha_err, 591 mask, bitmask, cdelt1, rsun_ref, rsun_obs)) 592 { 593 mbobra 1.1 mean_alpha = DRMS_MISSING_FLOAT; 594 mean_alpha_err = DRMS_MISSING_FLOAT; 595 } 596 597 // Set sharp keys 598 drms_setkey_float(sharpoutrec, "MEANALP", mean_alpha); 599 drms_setkey_float(sharpoutrec, "ERRALP", mean_alpha_err); 600 601 // Set sharp cea keys 602 drms_setkey_float(sharpceaoutrec, "MEANALP", mean_alpha); 603 drms_setkey_float(sharpceaoutrec, "ERRALP", mean_alpha_err); 604 605 } 606 607 /* MEANJZH, TOTUSJH, ABSNJZH, Example Function 11 (Requires Function 8) / 608 609 if (meanjzhflag \|\| totusjhflag \|\| absnjzhflag) 610 { 611 // First, compute Jz on all pixels 612 computeJz(bx_err, by_err, bx, by, dims, jz, jz_err, jz_err_squared, mask, bitmask, cdelt1, rsun_ref, rsun_obs, 613 derx, dery); 614 mbobra 1.1 615 // Then compute helicity quantities on select pixels 616 if (computeHelicity(jz_err, jz_rms_err, bz_err, bz, dims, jz, &mean_ih, &mean_ih_err, &total_us_ih, 617 &total_abs_ih, &total_us_ih_err, &total_abs_ih_err, mask, bitmask, cdelt1, rsun_ref, rsun_obs)) 618 { 619 mean_ih = DRMS_MISSING_FLOAT; 620 total_us_ih = DRMS_MISSING_FLOAT; 621 total_abs_ih = DRMS_MISSING_FLOAT; 622 mean_ih_err = DRMS_MISSING_FLOAT; 623 total_us_ih_err = DRMS_MISSING_FLOAT; 624 total_abs_ih_err = DRMS_MISSING_FLOAT; 625 } 626 627 // Set sharp keys 628 drms_setkey_float(sharpoutrec, "MEANJZH", mean_ih); 629 drms_setkey_float(sharpoutrec, "TOTUSJH", total_us_ih); 630 drms_setkey_float(sharpoutrec, "ABSNJZH", total_abs_ih); 631 drms_setkey_float(sharpoutrec, "ERRMIH", mean_ih_err); 632 drms_setkey_float(sharpoutrec, "ERRTUI", total_us_ih_err); 633 drms_setkey_float(sharpoutrec, "ERRTAI", total_abs_ih_err); 634 635 mbobra 1.1 // Set sharp cea keys 636 drms_setkey_float(sharpceaoutrec, "MEANJZH", mean_ih); 637 drms_setkey_float(sharpceaoutrec, "TOTUSJH", total_us_ih); 638 drms_setkey_float(sharpceaoutrec, "ABSNJZH", total_abs_ih); 639 drms_setkey_float(sharpceaoutrec, "ERRMIH", mean_ih_err); 640 drms_setkey_float(sharpceaoutrec, "ERRTUI", total_us_ih_err); 641 drms_setkey_float(sharpceaoutrec, "ERRTAI", total_abs_ih_err); 642 } 643 644 /** SAVNCPP, Example Function 12 (Requires Function 8) ***************/ 645 646 if (savncppflag) 647 { 648 // First, compute Jz on all pixels 649 computeJz(bx_err, by_err, bx, by, dims, jz, jz_err, jz_err_squared, mask, bitmask, cdelt1, rsun_ref, rsun_obs, 650 derx, dery); 651 652 // Then compute sums of Jz on select pixels 653 if (computeSumAbsPerPolarity(jz_err, bz_err, bz, jz, dims, &totaljz, &totaljz_err, 654 mask, bitmask, cdelt1, rsun_ref, rsun_obs)) 655 { 656 mbobra 1.1 totaljz = DRMS_MISSING_FLOAT; 657 totaljz_err = DRMS_MISSING_FLOAT; 658 } 659 660 // Set sharp keys 661 drms_setkey_float(sharpoutrec, "SAVNCPP", totaljz); 662 drms_setkey_float(sharpoutrec, "ERRJHT", totaljz_err); 663 664 // Set sharp cea keys 665 drms_setkey_float(sharpceaoutrec, "SAVNCPP", totaljz); 666 drms_setkey_float(sharpceaoutrec, "ERRJHT", totaljz_err); 667 } 668 669 /* MEANSHR and SHRGT45, Example Function 14 (Requires Keiji's code) ********/ 670 671 if (meanshrflag \|\| shrgt45flag) 672 { 673 // First compute potential field 674 for (int i = 0; i < nxny; i++) bpz[i] = bz[i]; 675 greenpot(bpx, bpy, bpz, nx, ny); 676 677 mbobra 1.1 // Then compute shear angles 678 if (computeShearAngle(bx_err, by_err, bh_err, bx, by, bz, bpx, bpy, bpz, dims, 679 &meanshear_angle, &meanshear_angle_err, &area_w_shear_gt_45, 680 mask, bitmask)) 681 { 682 meanshear_angle = DRMS_MISSING_FLOAT; // If fail, fill in NaN 683 area_w_shear_gt_45 = DRMS_MISSING_FLOAT; 684 meanshear_angle_err= DRMS_MISSING_FLOAT; 685 } 686 687 // Set sharp keys 688 drms_setkey_float(sharpoutrec, "MEANSHR", meanshear_angle); 689 drms_setkey_float(sharpoutrec, "SHRGT45", area_w_shear_gt_45); 690 drms_setkey_float(sharpoutrec, "ERRMSHA", meanshear_angle_err); 691 692 // Set sharp cea keys 693 drms_setkey_float(sharpceaoutrec, "MEANSHR", meanshear_angle); 694 drms_setkey_float(sharpceaoutrec, "SHRGT45", area_w_shear_gt_45); 695 drms_setkey_float(sharpceaoutrec, "ERRMSHA", meanshear_angle_err); 696 } 697
698 mbobra 1.8 /*** TOTFX, TOTFY, TOTFX, TOTBSQ, EPSX, EPSY, EPSZ , Example Function 16 (Lorentz forces) ********/ 699 700 if (totfxflag \|\| totfyflag \|\| totfzflag \|\| totbsqflag \|\| epsxflag \|\| epsyflag \|\| epszflag) 701 { 702 703 // Compute Lorentz forces 704 if (computeLorentz(bx, by, bz, fx, fy, fz, dims, &totfx, &totfy, &totfz, &totbsq, 705 &epsx, &epsy, &epsz, mask, bitmask, cdelt1, rsun_ref, rsun_obs)) 706 { 707 totfx = DRMS_MISSING_FLOAT; 708 totfy = DRMS_MISSING_FLOAT; 709 totfz = DRMS_MISSING_FLOAT; 710 totbsq = DRMS_MISSING_FLOAT; 711 epsx = DRMS_MISSING_FLOAT; 712 epsy = DRMS_MISSING_FLOAT; 713 epsz = DRMS_MISSING_FLOAT; 714 } 715 716 // Set sharp keys 717 drms_setkey_float(sharpoutrec, "TOTFX", totfx); 718 drms_setkey_float(sharpoutrec, "TOTFY", totfy); 719 mbobra 1.8 drms_setkey_float(sharpoutrec, "TOTFZ", totfz); 720 drms_setkey_float(sharpoutrec, "TOTBSQ",totbsq); 721 drms_setkey_float(sharpoutrec, "EPSX", epsx); 722 drms_setkey_float(sharpoutrec, "EPSY", epsy); 723 drms_setkey_float(sharpoutrec, "EPSZ", epsz); 724 725 // Set sharp cea keys 726 drms_setkey_float(sharpceaoutrec, "TOTFX", totfx); 727 drms_setkey_float(sharpceaoutrec, "TOTFY", totfy); 728 drms_setkey_float(sharpceaoutrec, "TOTFZ", totfz); 729 drms_setkey_float(sharpceaoutrec, "TOTBSQ",totbsq); 730 drms_setkey_float(sharpceaoutrec, "EPSX", epsx); 731 drms_setkey_float(sharpceaoutrec, "EPSY", epsy); 732 drms_setkey_float(sharpceaoutrec, "EPSZ", epsz); 733 734 } 735
736 mbobra 1.1 /***************************** END FLAGS ********************************/ 737 738 drms_free_array(bitmaskArray); 739 drms_free_array(maskArray); 740 drms_free_array(bxArray); 741 drms_free_array(byArray); 742 drms_free_array(bzArray); 743 drms_free_array(bx_errArray); 744 drms_free_array(by_errArray); 745 drms_free_array(bz_errArray);
746 mbobra 1.6 drms_free_array(losArray);
747 mbobra 1.1 } //endfor 748
749 mbobra 1.6 drms_close_records(sharpinrecset, DRMS_FREE_RECORD); 750 drms_close_records(sharpceainrecset, DRMS_FREE_RECORD); 751
752 mbobra 1.1 drms_close_records(sharpoutrecset, DRMS_INSERT_RECORD); 753 drms_close_records(sharpceaoutrecset, DRMS_INSERT_RECORD); 754 755 //used for select calculations 756 free(bh); free(bt); free(jz); 757 free(bpx); free(bpy); free(bpz); 758 free(derx); free(dery); 759 free(derx_bt); free(dery_bt); 760 free(derx_bz); free(dery_bz); 761 free(derx_bh); free(dery_bh); 762 free(bt_err); free(bh_err); free(jz_err); 763 free(jz_err_squared); free(jz_rms_err); 764 free(cvsinfoall);
765 mbobra 1.7
766 mbobra 1.6 free(rim); 767 free(p1p0); 768 free(p1n0); 769 free(p1p); 770 free(p1n); 771 free(p1); 772 free(pmap);
773 mbobra 1.7 free(p1pad); 774 free(pmapn);
775 mbobra 1.6
776 mbobra 1.8 // free the arrays that are related to the lorentz calculation 777 free(fx); free(fy); free(fz); 778
779 arta 1.3 return 0;
780 mbobra 1.1 } // DoIt

Karen Tian