Differences between revisions 1 and 24 (spanning 23 versions)
Revision 1 as of 2009-10-22 02:35:43
Size: 1712
Editor: l4-m0
Comment:
Revision 24 as of 2012-05-31 03:51:09
Size: 9742
Editor: l4-m0
Comment: .
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
## page was renamed from HARPSDataSeries
Line 3: Line 4:
A HARP is an HMI Active Region Patch that is identified in one or more HMI line-of-sight magnetograms. HARPs may be observed over an extended time interval. Each HARP has a serial number, the HARP_ID, that will often be linked with a NOAA Active Region. This data series provides pointers to information covering the entire disk passage for each HARP in the HMI catalog.
Line 5: Line 5:
The data series tracks patches by associating information from other data series using links to maps and parameters computed for patches identified in individual magnetograms and intensity images. There are no actual data segments, just links to vector, line-of-sight, and intensity data and associated keywords. == HARP Overview ==

A HARP (short for '''H'''MI '''A'''ctive '''R'''egion '''P'''atch) is an enduring coherent magnetic structure at the scale of a solar active region.
The primary purpose of the HARP data series is to provide the practical geometric information needed to track a region as it crosses the solar disk.
A HARP is initially identified in a sequence of HMI line-of-sight magnetograms.
HARPs are typically observed over several days (possibly as long as a disk passage) and tracked from one image to the next.
At each time step, the rectangular HARP bounding box is defined and a BITMAP that characterizes the pixels of the HARP is recorded.

Other summary parameters, such as total flux, are also determined.
A more comprehensive data series, SHARPS, are descried at SpaceWeatherHARP.

  . '''MHARPs'''
 
The definitive line-of-sight magnetic field HARPs are available in the data series `hmi.Mharp_720s`.
The '''Mharp''' data series is indexed by two prime keys, an integer identifier, `HARPNUM`, and the time, `T_REC`.
The HARP number is unique to the region during it's entire disk passage.
A particular `HARPNUM` will often be linked with a NOAA Active Region (see the relevant keywords: `NOAA_AR`, `NOAA_NUM`, and `NOAA_ARS`).
This data series provides pointers to information covering the entire disk passage for each HARP in the HMI catalog for each `HARPNUM` at each `T_REC`.
Because we use 720s HMI data, some HARPs contain as many as 1500 distinct `T_REC`'s, and some as few as three.

The HARPs are found by analyzing the active region masks in `hmi.Marmask_720s`.
The masks are in turn derived from line-of-sight magnetograms, `hmi.M_720s`, and corresponding intensitygrams, `hmi.Ic_noLimbDark_720s`.
All three of these data products are full-disk images in helioprojective-tangent coordinates (i.e., as projected on the focal plane in CCD coordinates,
and not remapped to a latitude-longitude system). Links to the magnetogram and the masks are provided.

   . HARP Bitmap

In addition to the keywords mentioned above, the HARP data series contains a 2D data segment, the `BITMAP`.
Coded values in the `BITMAP` indicate exactly which pixels within the rectangular bounding box are part of the HARP at the time `T_REC`.
The `BITMAP` is a rectangle with the size of the bounding box for the full-disk images referred to above, typically several hundred pixels in each dimension.
The bounding box is larger than the HARP because it is sized to enclose the largest heliographic extent of the HARP during it's entire disk passage.

 . The CCD pixel of the lower left corner of the bounding box is given in `CRPIX1` and `CRPIX2`.
 . The size of the box in pixels is given in `CRSIZE1` and `CRSIZE2`.
 . Note that the HMI fits images are rotated by the angle `CROTA2` (about 180 degrees).
 . Other keywords have information in heliographic coordinates.

The data series can be located by following the links to associated line-of-sight magnetograms.
For diagnostic or summary purposes, plots of individual keywords, such as integrated flux or size of the HARP, are also useful.

== Methodology ==

Once localized sites that are magnetically active have been found (i.e., building on the full-disk active region masks) the HARP identification problem consists of two pieces: spatially grouping magnetic activity into objects on the scale of active regions, and tracking these objects from image to image. The grouping problem is harder, because flux emergence can cause formerly isolated ARs to merge. This means that a given HARP cannot be declared complete until it has disappeared in view of the observer, or rotated off the visible disk. Consequently, final HARPs are delayed by about a month.

It is important to track HARPs up to the limb, so that all the history of the HARP can be taken in to account in making grouping decisions. Consequently, the grouping criterion takes the spherical geometry into account.

We expect it will be useful to have easy access to the precursors and successors of the HARP.
So, we extrapolate the area containing the HARP backwards in time from where it was first detected, and forward from the time where it vanished, two days in each direction. (Or less, if the entire region would rotate off-disk in this time.)
This has the effect of expanding the range of T_REC associated with each HARP.

The HARP identification component consists of two parts, a grouping/tracking component, implemented in Matlab, and a data ingestion component, implemented as a JSOC module.

== HARP Feature Scale ==

The following images show how the convolution kernel used for spatial grouping of active regions compares to
a small active region at disk center. The units on the top two plots are HMI pixels. The bottom plot shows
the convolution kernel at the same scale.

[http://sun.stanford.edu/~turmon/jsoc-wiki/kernel-scale-ar-mag-small.png]
[http://sun.stanford.edu/~turmon/jsoc-wiki/kernel-scale-ar-mask-small.png]

||<25%> [http://sun.stanford.edu/~turmon/jsoc-wiki/ar-grouping-kernel-center-small.png] ||<15%> When at the limb, the convolution kernel is foreshortened as shown at right ||<25%> [http://sun.stanford.edu/~turmon/jsoc-wiki/ar-grouping-kernel-limb-small.png] ||

== Example ==

The following images are approximate data segments extracted from the large February 2011 active region.
The corresponding HARP contains hundreds of `T_REC` values; we only show five.
The orange blob outlines the contents of the HARP. The black pixels, most of which are inside the HARP, are all pixels declared active in the mask. Some clumps of active pixels are not large enough to constitute a HARP.

The white rectangle is not part of the data segment. It is the bounding box in pixel coordinates which contains
the entire HARP, and its coordinates are part of the keywords.
There is a corresponding bounding box, not shown, in Stonyhurst latitude-longitude coordinates, which is also recorded in the keywords, as `MINLON0`, `MINLAT0`, etc.

[http://sun.stanford.edu/~turmon/jsoc-wiki/track-movie-2011-feb-066-zoom.png]
[http://sun.stanford.edu/~turmon/jsoc-wiki/track-movie-2011-feb-126-zoom.png]
[http://sun.stanford.edu/~turmon/jsoc-wiki/track-movie-2011-feb-186-zoom.png]
[http://sun.stanford.edu/~turmon/jsoc-wiki/track-movie-2011-feb-246-zoom.png]
[http://sun.stanford.edu/~turmon/jsoc-wiki/track-movie-2011-feb-306-zoom.png]
Line 8: Line 85:
# SERIES INFO
 . DATANAME = HARP
 . RETENTION = 0
 . ARCHIVE = 0
 . PRIMEKEYS = HARP_ID, T_REC
Anonther Example Showing HARPs on May 9, 2012:
Line 14: Line 87:
# PRIME KEY INFO
 . HARPID, INT
 . T_REC, TIME, Slotted
 . T_REC_STEP = 12MIN
 . T_REC_EPOCH = 1976.12.31_23:59:45.000_UTC
[[ImageLink(MovieFrame_HARP,MovieFrame_HARP,width=512,height=512)]]
Line 20: Line 89:
# PATCH INFO
 . PNUM - '' The patch number of the HARP at T_REC in the Patches_Found dataseries''
 . AREA, link,"AREA", patch - '' The AREA keyword of the patch``
 . I_MIN, link, "I_MIN", patch
 . FLUX, link,"FLUX",vecpatch - '' The computed flux of the vector field in the patch ''
 . BTOT, link, "BTOT", vecpatch
 . # OTHER information about the patches
||Bitmap for HARP 1638||Cut-out of Full Disk Mask||Cut out of Full Disk Magnetogram||
||[[ImageLink(BitMap_HARP,BitMap_HARP,width=300,height=256)]]||[[ImageLink(BitMask_HARP,BitMask_HARP,width=300,height=245)]]||[[ImageLink(BitMag_HARP,BitMag_HARP,width=300,height=245)]]||
Line 28: Line 92:
# SEGMENT INFO - links
 . data: arp_map, link, patch - '' Pointer to the bitmap of the patch ''
 . data: blos, link, patch - '' Pointer to pointer to line-of-sight magnetic field data ''
 . data: BTOT, link, vecpatch - '' Pointer to pointer to vector magnetic field data ''
== Bitmap ==
Line 33: Line 94:
# LINKS
 . link: patch, "Patches_Found", static
 . link: vecpatch, "Vector_Patches", dynamic
  ||||||BITMAP Pixel Values ||<10%>||Mask Value||
  || ||Outside HARP||Inside HARP|| || Mar_mask ||
  ||Active||2||34|| || 2 ||
  ||Quiet||1||33|| || 1 ||
  ||Off-limb||0|| || || 0 ||

== Keywords ==

Besides the standard HMI keywords (observation geometry, time, and WCS), we have these keywords for HARP at each `T_REC` where it was observed:

||'''Name'''||'''unit'''||'''Description'''||
||MINLON||degree||Minimum longitude for disk transit||
||MINLAT||degree||Minimum latitude for disk transit||
||MAXLON||degree||Maximum longitude for disk transit||
||MAXLAT||degree||Maximum latitude for disk transit||
||OMEGA||degree/day||Rotation rate||
||NPIX||none||Number of pixels within the identified region||
||SIZE||mH||Projected area of identified region on image in micro-hemisphere||
||AREA||mH||De-projected area of identified region on sphere in micro-hemisphere||
||NACR||none||Number of active pixels||
||SIZE_ACR||mH||Projected area of active pixels on image in micro-hemisphere||
||AREA_ACR||mH||De-projected area of active pixels on sphere in micro-hemisphere||
||MTOT||weber||Sum of absolute LoS flux within the identified region||
||MNET||weber||Net LoS flux within the identified region||
||MPOS_TOT||weber||Absolute value of total positive LoS flux||
||MNEG_TOT||weber||Absolute value of total negative LoS flux||
||MMEAN||gauss||Mean of LoS flux density||
||MSTDEV||gauss||Standard deviation of LoS flux density||
||MSKEW||none||Skewness of LoS flux density||
||MKURT||none||Kurtosis of LoS flux density||
||MINLAT0||degree||Minimum Stonyhurst latitude of pixels within the patch||
||MINLON0||degree||Minimum Stonyhurst longitude of pixels within the patch||
||MAXLAT0||degree||Maximum Stonyhurst latitude of pixels within the patch||
||MAXLON0||degree||Maximum Stonyhurst longitude of pixels within the patch||
||FWT_LAT||degree||Stonyhurst latitude of flux-weighted center of active pixels||
||FWT_LON||degree||Stonyhurst longitude of flux-weighted center of active pixels||
||FWTPOS_LAT||degree||Stonyhurst latitude of flux-weighted center of positive flux||
||FWTPOS_LON||degree||Stonyhurst longitude of flux-weighted center of positive flux||
||FWTNEG_LAT||degree||Stonyhurst latitude of flux-weighted center of negative flux||
||FWTNEG_LON||degree||Stonyhurst longitude of flux-weighted center of negative flux||
||T_FRST||TAI||T_REC of first frame of this HARPNUM||
||T_LAST||TAI||T_REC of last frame of this HARPNUM||

=== Note ===

 . This data product was published in April, 2012.


== Related Data Series ==
 . ["ARmaskDataSeries"]
 . PatchesFound (obsolete)
 . VectorPatches

----
 . Back to VectorMagneticField
 . Back to MagneticField
 . Back to Lev1Doc
 . Back to FrontPage

HARP - HMI Active Region Patches

HARP Overview

A HARP (short for HMI Active Region Patch) is an enduring coherent magnetic structure at the scale of a solar active region. The primary purpose of the HARP data series is to provide the practical geometric information needed to track a region as it crosses the solar disk. A HARP is initially identified in a sequence of HMI line-of-sight magnetograms. HARPs are typically observed over several days (possibly as long as a disk passage) and tracked from one image to the next. At each time step, the rectangular HARP bounding box is defined and a BITMAP that characterizes the pixels of the HARP is recorded.

Other summary parameters, such as total flux, are also determined. A more comprehensive data series, SHARPS, are descried at SpaceWeatherHARP.

  • MHARPs

The definitive line-of-sight magnetic field HARPs are available in the data series hmi.Mharp_720s. The Mharp data series is indexed by two prime keys, an integer identifier, HARPNUM, and the time, T_REC. The HARP number is unique to the region during it's entire disk passage. A particular HARPNUM will often be linked with a NOAA Active Region (see the relevant keywords: NOAA_AR, NOAA_NUM, and NOAA_ARS). This data series provides pointers to information covering the entire disk passage for each HARP in the HMI catalog for each HARPNUM at each T_REC. Because we use 720s HMI data, some HARPs contain as many as 1500 distinct T_REC's, and some as few as three.

The HARPs are found by analyzing the active region masks in hmi.Marmask_720s. The masks are in turn derived from line-of-sight magnetograms, hmi.M_720s, and corresponding intensitygrams, hmi.Ic_noLimbDark_720s. All three of these data products are full-disk images in helioprojective-tangent coordinates (i.e., as projected on the focal plane in CCD coordinates, and not remapped to a latitude-longitude system). Links to the magnetogram and the masks are provided.

  • HARP Bitmap

In addition to the keywords mentioned above, the HARP data series contains a 2D data segment, the BITMAP. Coded values in the BITMAP indicate exactly which pixels within the rectangular bounding box are part of the HARP at the time T_REC. The BITMAP is a rectangle with the size of the bounding box for the full-disk images referred to above, typically several hundred pixels in each dimension. The bounding box is larger than the HARP because it is sized to enclose the largest heliographic extent of the HARP during it's entire disk passage.

  • The CCD pixel of the lower left corner of the bounding box is given in CRPIX1 and CRPIX2.

  • The size of the box in pixels is given in CRSIZE1 and CRSIZE2.

  • Note that the HMI fits images are rotated by the angle CROTA2 (about 180 degrees).

  • Other keywords have information in heliographic coordinates.

The data series can be located by following the links to associated line-of-sight magnetograms. For diagnostic or summary purposes, plots of individual keywords, such as integrated flux or size of the HARP, are also useful.

Methodology

Once localized sites that are magnetically active have been found (i.e., building on the full-disk active region masks) the HARP identification problem consists of two pieces: spatially grouping magnetic activity into objects on the scale of active regions, and tracking these objects from image to image. The grouping problem is harder, because flux emergence can cause formerly isolated ARs to merge. This means that a given HARP cannot be declared complete until it has disappeared in view of the observer, or rotated off the visible disk. Consequently, final HARPs are delayed by about a month.

It is important to track HARPs up to the limb, so that all the history of the HARP can be taken in to account in making grouping decisions. Consequently, the grouping criterion takes the spherical geometry into account.

We expect it will be useful to have easy access to the precursors and successors of the HARP. So, we extrapolate the area containing the HARP backwards in time from where it was first detected, and forward from the time where it vanished, two days in each direction. (Or less, if the entire region would rotate off-disk in this time.) This has the effect of expanding the range of T_REC associated with each HARP.

The HARP identification component consists of two parts, a grouping/tracking component, implemented in Matlab, and a data ingestion component, implemented as a JSOC module.

HARP Feature Scale

The following images show how the convolution kernel used for spatial grouping of active regions compares to a small active region at disk center. The units on the top two plots are HMI pixels. The bottom plot shows the convolution kernel at the same scale.

[http://sun.stanford.edu/~turmon/jsoc-wiki/kernel-scale-ar-mag-small.png] [http://sun.stanford.edu/~turmon/jsoc-wiki/kernel-scale-ar-mask-small.png]

[http://sun.stanford.edu/~turmon/jsoc-wiki/ar-grouping-kernel-center-small.png]

When at the limb, the convolution kernel is foreshortened as shown at right

[http://sun.stanford.edu/~turmon/jsoc-wiki/ar-grouping-kernel-limb-small.png]

Example

The following images are approximate data segments extracted from the large February 2011 active region. The corresponding HARP contains hundreds of T_REC values; we only show five. The orange blob outlines the contents of the HARP. The black pixels, most of which are inside the HARP, are all pixels declared active in the mask. Some clumps of active pixels are not large enough to constitute a HARP.

The white rectangle is not part of the data segment. It is the bounding box in pixel coordinates which contains the entire HARP, and its coordinates are part of the keywords. There is a corresponding bounding box, not shown, in Stonyhurst latitude-longitude coordinates, which is also recorded in the keywords, as MINLON0, MINLAT0, etc.

[http://sun.stanford.edu/~turmon/jsoc-wiki/track-movie-2011-feb-066-zoom.png] [http://sun.stanford.edu/~turmon/jsoc-wiki/track-movie-2011-feb-126-zoom.png] [http://sun.stanford.edu/~turmon/jsoc-wiki/track-movie-2011-feb-186-zoom.png] [http://sun.stanford.edu/~turmon/jsoc-wiki/track-movie-2011-feb-246-zoom.png] [http://sun.stanford.edu/~turmon/jsoc-wiki/track-movie-2011-feb-306-zoom.png]

Anonther Example Showing HARPs on May 9, 2012:

ImageLink(MovieFrame_HARP,MovieFrame_HARP,width=512,height=512)

Bitmap for HARP 1638

Cut-out of Full Disk Mask

Cut out of Full Disk Magnetogram

ImageLink(BitMap_HARP,BitMap_HARP,width=300,height=256)

ImageLink(BitMask_HARP,BitMask_HARP,width=300,height=245)

ImageLink(BitMag_HARP,BitMag_HARP,width=300,height=245)

Bitmap

  • BITMAP Pixel Values

    Mask Value

    Outside HARP

    Inside HARP

    Mar_mask

    Active

    2

    34

    2

    Quiet

    1

    33

    1

    Off-limb

    0

    0

Keywords

Besides the standard HMI keywords (observation geometry, time, and WCS), we have these keywords for HARP at each T_REC where it was observed:

Name

unit

Description

MINLON

degree

Minimum longitude for disk transit

MINLAT

degree

Minimum latitude for disk transit

MAXLON

degree

Maximum longitude for disk transit

MAXLAT

degree

Maximum latitude for disk transit

OMEGA

degree/day

Rotation rate

NPIX

none

Number of pixels within the identified region

SIZE

mH

Projected area of identified region on image in micro-hemisphere

AREA

mH

De-projected area of identified region on sphere in micro-hemisphere

NACR

none

Number of active pixels

SIZE_ACR

mH

Projected area of active pixels on image in micro-hemisphere

AREA_ACR

mH

De-projected area of active pixels on sphere in micro-hemisphere

MTOT

weber

Sum of absolute LoS flux within the identified region

MNET

weber

Net LoS flux within the identified region

MPOS_TOT

weber

Absolute value of total positive LoS flux

MNEG_TOT

weber

Absolute value of total negative LoS flux

MMEAN

gauss

Mean of LoS flux density

MSTDEV

gauss

Standard deviation of LoS flux density

MSKEW

none

Skewness of LoS flux density

MKURT

none

Kurtosis of LoS flux density

MINLAT0

degree

Minimum Stonyhurst latitude of pixels within the patch

MINLON0

degree

Minimum Stonyhurst longitude of pixels within the patch

MAXLAT0

degree

Maximum Stonyhurst latitude of pixels within the patch

MAXLON0

degree

Maximum Stonyhurst longitude of pixels within the patch

FWT_LAT

degree

Stonyhurst latitude of flux-weighted center of active pixels

FWT_LON

degree

Stonyhurst longitude of flux-weighted center of active pixels

FWTPOS_LAT

degree

Stonyhurst latitude of flux-weighted center of positive flux

FWTPOS_LON

degree

Stonyhurst longitude of flux-weighted center of positive flux

FWTNEG_LAT

degree

Stonyhurst latitude of flux-weighted center of negative flux

FWTNEG_LON

degree

Stonyhurst longitude of flux-weighted center of negative flux

T_FRST

TAI

T_REC of first frame of this HARPNUM

T_LAST

TAI

T_REC of last frame of this HARPNUM

Note

  • This data product was published in April, 2012.


JsocWiki: HARPDataSeries (last edited 2015-05-23 07:42:08 by MichaelTurmon)